LNBR | Publicações Científicas

Substrate and Product-Assisted Catalysis: Molecular Aspects behind Structural Switches along Organic Hydroperoxide Resistance Protein Catalytic Cycle

Domingos RM, Teixeira RD, Zeida A, Agudelo WA, Alegria TGP, da Silva Neto JF, Vieira PS, Murakami MT, Farah CS, Estrin DA, Netto LES
ACS Catal. 2020, 19;10(12):6587–602.

A Novel Fungal Lipase With Methanol Tolerance and Preference for Macaw Palm Oil

Rade LL, da Silva MNP, Vieira OS, Milan N, de Sousa CM, de Melo RR, Klein BC, Bonomi A, de Castro HF, Murakami MT, Zanphorlin LM
Frontiers in Bioengineering and Biotechnology. 2020, 8, 304

A vision on biomass-to-liquids (BTL) thermochemical routes in integrated sugarcane biorefineries for biojet fuel production

Neves RC, Klein BC, da Silva RJ, Rezende MCAF, Funke A, Gómez EO, Bonomi AMFLJ, Maciel Filho R
Renewable & Sustainable Energy Reviews. 2020, 119, 109607

Engineering aspects of hydrothermal pretreatment: From batch to continuous operation, scale-up and pilot reactor under biorefinery concept

Ruiz HA, Conrad M, Sun S-N, Sanchez A, Rocha GJM, Romani A, Castro E, Torres A, Rodríguez-Jasso RM, Andrade LP, Smirnova I, Sun R-C, Meyer AS
Bioresource Technology. 2020, 299, 122685

Process simulation of renewable electricity from sugarcane straw: Techno-economic assessment of retrofit scenarios in Brazil

Watanabe MDB, Morais ER, Cardoso TF, Chagas MF, Junqueira TL, Carvalho DJ, Bonomi A
Journal of Cleaner Production. 2020, 254, 120081

Rational engineering of the Trichoderma reesei RUT-C30 strain into an industrially relevant platform for cellulase production

Fonseca LM, Parreiras LS, Murakami MT
Biotechnology for Biofuels. 2020, 13, 93

Re-use of sugarcane residue as a novel biochar fertiliser – Increased phosphorus use efficiency and plant yield

Borges BMMN, Strauss M, Camelo PA, Sohi SP, Franco HCJ
Journal of Cleaner Production. 2020, 262, 121406

Shifting abundances of communities associated to nitrogen cycling in soils promoted by sugarcane harvest systems

Rigoto A, Cotta SR, Dias ACF, Carvalho JLN, Andreote FD
Letters in Applied Microbiology. 2020

Simultaneous obtaining of oxidized lignin and cellulosic pulp from steam-exploded sugarcane bagasse

Rocha GJM, Andrade LP, Martín C, Araújo GT, Mouchrek Filho VE, Curvelo AAS
Industrial Crops and Products. 2020, 147, 112227

Spatially remote motifs cooperatively affect substrate preference of a ruminal GH26-type endo-β-1,4-mannanase

Mandelli F, de Morais MAB, de Lima EA, Oliveira L, Persinoti GF, Murakami MT
The Journal of Biological Chemistry. 2020, 295, 5012-5021

Structural insights into β-1,3-glucan cleavage by a glycoside hydrolase family

Santos CR, Costa PACR, Vieira PS, Gonzalez SET, Correa TLR, Lima EA, Mandelli F, Pirolla RAS, Domingue MN, Cabral L, Martins MP, Cordeiro RL, Júnior AT, Souza BP, Prates ET, Gozzo FC, Persinoti GF, Skaf MS, Murakami MT
Nature Chemical Biology. 2020, 16(6)

Techno-economic assessment of bioenergy and biofuel production in integrated sugarcane biorefinery: Identification of technological bottlenecks and economic feasibility of dilute acid pretreatment

Vasconcelos MH, Mendes FM, Ramos L, Dias MOS, Bonomi A, Jesus CDF, Watanabe MDB, Junqueira TL, Milagres AMF, Ferraz A, Santos JC
Energy. 2020, 199, 117422

Unveiling the interaction between the molecular motor Myosin Vc and the small GTPase Rab3A

Dolce LG, Ohbayashi N, da Silva DDC, Ferrari AJR, Pirolla RAS, Schwarzer ACAP, Zanphorlin LM, Cabral L, Fioramonte M, Ramos CHI, Gozzo FC, Fukuda M, Giuseppe PO, Murakami MT
Journal of Proteomics. 2020, 212, 103549

A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor

Mariutti RB, Hernández-González JE, Nascimento AFZ, de Morais MAB, Murakami MT, Carareto CMA, Arni RK
Biochimica et Biophysica Acta (BBA) - General Subjects. 2020, 1864(7), 129597

Assessment of the self-sustained energy generation of an integrated first and second generation ethanol production from sugarcane through the characterization of the hydrolysis process residues

Carvalho DJ, Moretti RR, Colodette JL, Bizzo WA
Energy Conversion and Management. 2020, 203, 112267

Crop rotation and sequence effects on temporal variation of CO2 emissions after long-term no-till application

Xavier CV, Moitinho MR, Teixeira DT, Santos GAA, Corá JE, La Scala Jr N
Science of the Total Environment. 2020, 709, 136107

Crystal structure of a novel xylose isomerase from Streptomyces sp. F-1 revealed the presence of unique features that differ from conventional classes

Miyamoto RY, Sousa AS, Vieira PS, Melo RR, Scarpassa JA, Ramos CHI, Murakami MT, Ruller R, Zanphorlin LM
Biochimica et Biophysica Acta (BBA) - General Subjects. 2020, 1864(5), 129549

Designing a cocktail containing redox enzymes to improve hemicellulosic hydrolysate fermentability by microorganisms

Tramontina R, de Paiva LBB, de Sousa AS, Alves R, Zetty-Arenas AM, Nascimento VM, Rabelo SC, Azzoni SF, Ruller R, Squina FM
Enzyme and Microbial Technology. 2020, 135, 109490

Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 β-Xylosidases

de Morais MAB, Polo CC, Domingues MN, Persinoti GF, Pirolla RAS, de Souza FHM, Correa JBL, dos Santos CR, Murakami MT
Frontiers in Bioengineering and Biotechnology. 2020, 8, 419

From agriculture residue to upgraded product: The thermochemical conversion of sugarcane bagasse for fuel and chemical products

Schmitt CC, Moreira R, Neves RC, Richter D, Funke A, Raffelt K, Grunwaldt J- D, Dahmen L
Fuel Processing Technology. 2020, 197, 106199

Functional genomic analysis of bacterial lignin degraders: diversity in mechanisms of lignin oxidation and metabolism

Granja- Traves RS, Persinoti GF, Squina FM, Bugg TDH
Applied Microbiology and Biotechnology. 2020, Early Access

Improvement of homologous GH10 xylanase production by deletion of genes with predicted function in the Aspergillus nidulans secretion pathway

Zubieta MP, Gerhardt JA, Rubio MV, Terrasan CRF, Persinoti GF, Antoniel EP, Contesini FJ, Prade RA, Damásio ARL
Microbial Biotechnology. 2020, Early Access

Rheological and antioxidant properties of chitosan/gelatin-based materials functionalized by pomegranate peel extract

Bertolo MRV, Martins VCA, Horn MM, de Paiva LBB, Plepis AMG
Carbohydrate Polymers. 2020, 228, 115386

A generalized space-time OBIA classification scheme to map sugarcane areas at regional scale, using Landsat images time-series and the random forest algorithm

Luciano ACS, Picoli MCA, Rocha JV, Duft DG, Lamparelli RAC, Leal MRLV, le Maire G
International Journal of Applied Earth Observation and Geoinformation. 2019, 80, 127-136

A New Subspecies of Heliconius hermathena (Nymphalidae: Heliconiinae) from Southern Amazonia

Freitas AVL, Ramos RR, Brandão KLS, Coutouné N, Magaldi LM, Pablos JL, Rosser N, Brown Jr. KS
Neotropical Entomology. 2019, 48(3), 467-475

A Novel Scytalidium Species: Understand the Cellulolytic System for Biomass Saccharification

Delabona PS, da Silva MR, Lee MS, Paixão DAA, Lima DJS, Souza MGS, Bussamra BC, Rodrigues GN, Santos AS, Pradella JGC
Brazilian Journal of Chemical Engineering. 2019, 36(1), 85-97

A regional approach to determine economic, environmental and social impacts of different sugarcane production systems in Brazil

Cardoso TF, Watanabe MDB, Nogueira LAH, Chagas MF, Cavalett O, de Morais ER, Leal MRLV, Souza AM, Cortez LAB, Bonomi AMFLJ
Biomass & Bioenergy. 2019, 120, 9-20

Can reduced tillage sustain sugarcane yield and soil carbon if straw is removed?

Tenelli S, Bordonal RO, Barbosa LC, Carvalho JLN
BioEnergy Research. 2019, 12(4), 764-777

Changes in Soil Pest Populations Caused by Sugarcane Straw Removal in Brazil

Castro SGQ, Dinardo- Miranda LLD, Fracasso JV, Bordonal RO, Menandro LMS, Franco HCJ, Carvalho JLN
BioEnergy Research. 2019, 12(4), 878-887

Co-culture strategy for improved 2G bioethanol production using a mixture of sugarcane molasses and bagasse hydrolysate as substrate

Farias D, Maugeri Filho F
Biochemical Engineering Journal. 2019, 147, 29-38

Commercial Sugarcane Dry Cleaning Systems in Brazil: Progress and Challenges

Soares CCSP, Okuno FM, Duft DG, Carvalho DJ, Morandi J, Guizelini Júnior PC, Trez CR, Mantelatto PE, Leal MRLV
BioEnergy Research. 2019, 12(4), 920-929

Comparison of biofuel life-cycle GHG emissions assessment tools: The case studies of ethanol produced from sugarcane, corn, and wheat

Pereira LG, Cavalett O, Bonomi AMFLJ, Zhang Y, Warner E, Chum HL
Renewable & Sustainable Energy Reviews. 2019, 110, 1-12

Crop rotation and succession in a no-tillage system: Implications for CO2 emission and soil attributes

Xavier CV, Moitinho MR, Teixeira DT, Santos GAA, Barbosa MA, Milori DMBP, Rigobelo E, Corá JE, La Scala Jr. N
Journal of Environmental Management. 2019, 245, 8-15

Cross-Linking with Polyethylenimine Confers Better Functional Characteristics to an Immobilized beta-glucosidase from Exiguobacterium antarcticum B7

de Melo RR, Alnoch RC, de Sousa AS, Sato HH, Ruller R, Mateo C
Catalysts. 2019, 9(3), 223

Functional characterization and comparative analysis of two heterologous endoglucanases from diverging subfamilies of glycosyl hydrolase family 45

Berto GL, Velasco J, Ribeiro CTC, Zanphorlin LM, Domingues MN, Murakami MT, Polikarpov I, Oliveira LC, Ferraz A, Segato F
Enzyme and Microbial Technology. 2019, 120, 23-35

Fungal L-asparaginase: Strategies for production and food applications

da Cunha MC, Aguilar JGS, de Melo RR, Nagamatsu ST, Ali F, Castro RJS, Sato HH
Food Research International. 2019, 126, 108658

Genome sequence of the H-2-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant

Fonseca BC, Riaño-Pachón DM, Guazzaroni M-E, Spiller VR
Genetics and Molecular Biology. 2019, 42(1), 139-144

Genome-wide sequencing and metabolic annotation of Pythium irregulare CBS 494.86: understanding Eicosapentaenoic acid production

Fernandes BS, Dias O, Costa G, Kaupert Neto AA, Resende TFC, Oliveira JVC, Riaño-Pachón DM, Zaiat M, Pradella JGC, Rocha I
BMC Biotechnology. 2019, 19, 41

Land Use and Seasonal Effects on the Soil Microbiome of a Brazilian Dry Forest

Lacerda Júnior GV, Noronha MF, Cabral L, Delforno TP, de Sousa STP, Fernandes Júnior PI, de Melo IS, Oliveira VM
Frontiers in Microbiology. 2019, 10, 648

Legume nitrogen credits for sugarcane production: implications for soil N availability and ratoon yield

Tenelli S, Otto R, Castro SAQ, Sanchéz CEB, Sattolo TMS, Kamogawa M Y, Pagliari PH, Carvalho JLN
Nutrient Cycling in Agroecosystems. 2019, 113(3), 307-322

Lignins from sugarcane bagasse: Renewable source of nanoparticles as Pickering emulsions stabilizers for bioactive compounds encapsulation

Bertolo MRV, de Paiva LBB, Nascimento VM, Gandin CA, Oliveira Neto M, Driemeier CE, Rabelo SC
Industrial Crops and Products. 2019, 140, 111591

Liquid-liquid equilibrium data and thermophysical properties for ternary systems composed of water, acetic acid and different solvents

de Oliveira LH, Morgado GP, Boni R, Roque LR, Pinto RR, Rabelo SC
Fluid Phase Equilibria. 2019, 482, 48-63

Liquid-liquid extraction: A promising alternative for inhibitors removing of pentoses fermentation

Roque LR, Morgado GP, Nascimento VM, Ienczak JL, Rabelo SC
Fuel. 2019, 242, 775-787

Metabolic Regulation and Development of Energy Cane Setts upon Auxin Stimulus

Cunha CP, de Abreu LGF, Grassi MCB, Aricetti JA, Machado EC, Pereira GAG, Oliveira JVC
Plant and Cell Physiology. 2019, 61(3), 606-6015

Microbiota of eggs revealed by 16S rRNA-based sequencing: From raw materials produced by different suppliers to chilled pasteurized liquid products

Vieira DAP, Cabral L, Noronha MF, Lacerda Júnior GV, Sant'Ana AS
Food Control. 2019, 96, 194-204

Multilocation Straw Removal Effects on Sugarcane Yield in South-Central Brazil

Carvalho JLN, Menandro LMS, Castro SGQ, Cherubin MR, Bordonal RO, Barbosa LC, Gonzaga LC, Tenelli S, Franco HCJ, Kölln OT, Castioni GAF
BioEnergy Research. 2019, 12(4), 813-829

Myosin Va interacts with the exosomal protein spermine synthase

Dolce LG, da Silva Junior RP, Assis LHP, Nascimento AFZ, Araujo JS, Meschede IP, Espreafico EM, Giuseppe PO, Murakami MT
Bioscience Reports. 2019, 39(3), BSR20182189

Novel redox-active enzymes for ligninolytic applications revealed from multiomics analyses of Peniophora sp. CBMAI 1063, a laccase hyper-producer strain

de Paiva LBB, Persinoti GF, Cairo JPLF, Liberato MV, Gonçalves TA, Otero IVR, Mainardi PH, Felby C, Sette LD, Squina FM
Scientific Reports. 2019, 9, 17564

Online monitoring of the redox potential in microaerobic and anaerobic Scheffersomyces stipitis fermentations

Bonan CIDG, Biazi LE, Santos SC, Soares LB, Dionisio SR, Hoffmam ZB, Costa AC, Ienczak JL
Biotechnology Letters. 2019, 41(6-7), 753-761

Organomineral phosphate fertilizer from sugarcane byproduct and its effects on soil phosphorus availability and sugarcane yield

Borges BMMN, Abdala DB, de Souza MF, Viglio LM, Coelho MJA, Pavinato PS, Franco HCJ
Geoderma. 2019, 339, 20-30

Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts’ Fermentation in Industry

Borelli G, Fiamenghi MB, dos Santos LV, Carazzolle MF, Pereira GAG, José J
Genome Biology and Evolution. 2019, 11 n. 7(7), 1923-1938

Precision production environments for sugarcane fields

Sanches GM, de Paula MTN, Magalhães PSG, Duft DG, Vitti AC, Kölln OT, Borges BMMN, Franco HCJ
Scientia Agricola. 2019, 76(1), 10-17

Roadside collection of training data for cropland mapping is viable when environmental and management gradients are surveyed

Waldner F, Bellemans N, Hochman Z, Newby T, de Abelleyra D, Verón SR, Bartalev S, Lavreniuk M, Kussul N, le Maire G, Simões M, Skakun, Defourny P
International Journal of Applied Earth Observation and Geoinformation. 2019, 80, 82-93

Screening of protic ionic liquids for sugarcane bagasse pretreatment

Pin TC, Nakasu PYS, Mattedi S, Rabelo SC, Costa AC
Fuel. 2019, 235, 1506-1514

Short-term impacts of high levels of nitrogen fertilization on soil carbon dynamics in a tropical pasture

Borges BMMN, Bordonal RO, Silveira ML, Coutinho ELM
Catena. 2019, 174, 413-416

Simulating scenarios for compost and vinasse use to improve the economics and environmental aspects of representative Colombian sugarcane production systems

Ordonez DAR, Leal MRLV, Bonomi A, Cortez LAB, Cavalett O, Rincón JM
Renewable Agriculture and Food Systems. 2019, , 1-15

Straw Removal Effects on Soil Water Dynamics, Soil Temperature, and Sugarcane Yield in South-Central Brazil

Corrêa STR, Barbosa LC, Menandro LMS, Scarpare FV, Reichardt K, Moraes LO, Hernandes TAD, Franco HCJ, Carvalho JLN
BioEnergy Research. 2019, 12(4), 749-763

Sugarcane drought detection through spectral indices derived modeling by remote-sensing techniques

Picoli MCA, Machado PG, Duft DG, Scarpare FV, Corrêa STR, Hernandes TAD, Rocha JV
Modeling Earth Systems and Environment. 2019, 5(4), 1679-1688

Sugarcane ethanol and beef cattle integration in Brazil

de Souza NRD, Fracarolli JA, Junqueira TL, Chagas MF, Cardoso TF, Watanabe MDB, Cavalett O, Venzke Filho SP, Dale BE, Bonomi AMFLJ, Cortez LAB
Biomass & Bioenergy. 2019, 120, 448-457

Sugarcane must fed-batch fermentation by Saccharomyces cerevisiae: impact of sterilized and non-sterilized sugarcane must

Bonatelli ML, Ienczak JL, Labate CA
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 2019, 112(8), 1177-1187

Sugarcane Straw Removal: Implications to Soil Fertility and Fertilizer Demand in Brazil

Cherubin MR, Lisboa IP, Silva AGB, Varanda LL, Bordonal RO, Carvalho JLN, Otto R, Pavinato PS, Soltangheisi A, Cerri CEP
BioEnergy Research. 2019, 12(4), 888-900

Sustainable Sugarcane Straw Special Issue: Considerations for Brazilian Bioenergy Production

Carvalho JLN, Cerri CEP, Karlen DL
BioEnergy Research. 2019, Early Access

An engineered GH1 ss-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials

Santos CA, de Morais MAB, Terrett OM, Lyczakowski JJ, Zanphorlin LM, Ferreira Filho JA, Tonoli CCC, Murakami MT, Dupree P, Souza AP
Scientific Reports. 2019, 9, 4903

Beyond ethanol, sugar, and electricity: a critical review of product diversification in Brazilian sugarcane mills

Klein BC, Sampaio ILM, Mantelatto PE, Maciel Filho R, Bonomi AMFLJ
Biofuels Bioproducts & Biorefining-Biofpr. 2019, 13(3), 809-821

Synthesis of long-chain polyols from the Claisen condensation of gamma-valerolactone

Santos CS, Soares CCSP, Vieira AS, Burtoloso ACB
Green Chemistry. 2019, 21(23), 6441-6450

Bioinformatics applied to biotechnology: A review towards bioenergy research

Carvalho LM, Borelli G, Camargo AP, Assis MA, Ferraz SMF, Fiamenghi MB, José J, Mofatto LS, Persinoti GF, Silva NV, Vasconcelos AA, Pereira GAG, Carazzolle MF
Biomass & Bioenergy. 2019, 123, 195-224

Technical and Economic Parameters of Sugarcane Straw Recovery: Baling and Integral Harvesting

Okuno FM, Cardoso TF, Duft DG, Luciano ACS, Neves JLM, Soares CCSP, Leal MRLV
BioEnergy Research. 2019, Early Access

Biomass Production and Nutrient Removal of Energy Cane Genotypes in Northeastern Brazil

Boschiero BN, Castro SGQ, da Rocha AEQ, Franco HCJ, Carvalho JLN, Soriano HL, dos Santos JA, Bressiani JA, Kölln OT
Crop Science. 2019, 59(1), 379-391

Can alternative N-fertilization methods influence GHG emissions and biomass production in sugarcane fields?

Borges CD, Carvalho JLN, Kölln OT, Sanches GM, da Silva MJ, Castro SGQ, Castro SAQ, Sousa LL, Oliveira JVC, Cantarella H, Vargas VP, Tsai SM, Franco HCJ
Biomass & Bioenergy. 2019, 120, 21-27

The histidine kinase slnCl1 of Colletotrichum lindemuthianum as a pathogenicity factor against Phaseolus vulgaris L

Nogueira GB, dos Santos LV, Queiroz CB, Corrêa TLR, Menicucci RP, Bazzolli DMS, Araújo EF, de Queiroz MV
Microbiological Research. 2019, 219, 110-122

Classification of Crops, Pastures, and Tree Plantations along the Season with Multi-Sensor Image Time Series in a Subtropical Agricultural Region

Santos CLMO, Lamparelli RAC, Figueiredo GKDA, Dupuy S, Boury J, Luciano ACS, Torres RS, le Maire G
Remote Sensing. 2019, 11(3), 334

Towards enhanced n-butanol production from sugarcane bagasse hemicellulosic hydrolysate: Strain screening, and the effects of sugar concentration and butanol tolerance

Zetty-Arenas AM, Alves RF, Portela CAF, Mariano AP, Basso TO, Tovar LP, Maciel Filho R, Azzoni SF
Biomass & Bioenergy. 2019, 126, 190-198

Comparative life cycle assessment of first- and second-generation ethanol from sugarcane in Brazil

Maga D, Thonemann N, Hiebel M, Sebastião D, Lopes TF, Fonseca C, Gírio F
International Journal of Life Cycle Assessment. 2019, 24(2), 266-280

Decision-making on the optimum timing for nitrogen fertilization on sugarcane ratoon

Castro SGQ, Rossi Neto J, Kölln OT, Borges BMMN, Franco HCJ
Scientia Agricola. 2019, 76(3), 237-242

Drift-diffusion (DrDiff) framework determines kinetics and thermodynamics of two-state folding trajectory and tunes diffusion models

Freitas FC, Lima AN, Contessoto VG, Whitford PC, Oliveira RJ
Journal of Chemical Physics. 2019, 151(11), 114106

Economic analysis of polyhydroxybutyrate production by Cupriavidus necator using different routes for product recovery

Pavan FA, Junqueira TL, Watanabe MDB, Bonomi AMFLJ, Quines LK, Schmidell W, Aragão GMF
Biochemical Engineering Journal. 2019, 146, 97-104

Effects of long-term no-tillage systems with different succession cropping strategies on the variation of soil CO2 emission

Santos GAA, Moitinho MR, Silva BO, Xavier CV, Teixeira DT, Corá JE, La Scala Jr. N
Science of the Total Environment. 2019, 686, 413-424

Electricity Production from Sugarcane Straw Recovered Through Bale System: Assessment of Retrofit Projects

Sampaio ILM, Cardoso TF, de Souza NRD, Watanabe MDB, Carvalho DJ, Bonomi AMFLJ, Junqueira TL
BioEnergy Research. 2019, 12(4), 865-877

Environmental and economic assessment of the co-firing of the coal-bagasse mixture in the Colombian sugarcane mills

Rueda Ordoñez DA, Leal MRLV, Bonomi AMFLJ, Cortez LAB, Cavalett O, Rincón JM
Revista UIS Ingenierías. 2019, 18(2), 77-88

Greenhouse gas emissions in conversion from extensive pasture to other agricultural systems in the Andean region of Colombia

Parra AS, de Figueiredo EB, Bordonal RO, Moitinho MR, Teixeira Dde T, La Scala Jr. N
Environment Development and Sustainability. 2019, 21(1), 249-262

Implications of Sugarcane Straw Removal for Soil Greenhouse Gas Emissions in São Paulo State, Brazil

Gonzaga LC, Zotelli Ldo C, Castro SGQ, Oliveira BG, Bordonal ROdeCantarella H, Carvalho JLN
BioEnergy Research. 2019, 12(4), 843-857

Lignins isolated from Prickly pear cladodes of the species Opuntia ficus-indica (Linnaeus) Miller and Opuntia cochenillifera (Linnaeus) Miller induces mice splenocytes activation, proliferation and cytokines production

da Cruz Filho IJ, Barros BRS, Aguiar LMS, Navarro CDC, Ruas JS, Lorena VMB, Rocha GJM, Vercesi AE, de Melo CML, Souto-Maior AM
International Journal of Biological Macromolecules. 2019, 123, 1331-1339

Low carbon biofuels and the New Brazilian National Biofuel Policy (RenovaBio): A case study for sugarcane mills and integrated sugarcane-microalgae biorefineries

Klein BC, Chagas MF, Watanabe MDB, Bonomi AMFLJ, Maciel Filho R
Renewable & Sustainable Energy Reviews. 2019, 115, 109365

N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase

Cordeiro RL, Pirolla RAS, Persinoti GF, Gozzo FC, de Giuseppe PO, Murakami MT
Journal of Molecular Biology. 2019, 431(4), 732-747

Soil CO2 emission and short-term soil pore class distribution after tillage operations

Silva BO, Moitinho MR, Santos GAA, Teixeira DT, Fernandes C, La Scala Jr. N
Soil & Tillage Research. 2019, 186, 224-232

Soil Macrofauna Responses to Sugarcane Straw Removal for Bioenergy Production

Menandro LMS, Moraes LO, Borges CD, Cherubin MR, Castioni GAF, Carvalho JLN
BioEnergy Research. 2019, Early Access

Soil physical quality associated with tillage practices during sugarcane planting in south-central Brazil

Barbosa LC, Magalhães PSG, Bordonal RO, Cherubin MR, Castioni GAF, Tenelli S, Franco HCJ, Carvalho JLN
Soil & Tillage Research. 2019, 195, 104383

Soil tillage and cover crop on soil CO2 emissions from sugarcane fields

Farhate CVV, de Souza ZM, La Scala Jr N, de Sousa ACM, Santos APG, Carvalho JLN
Soil Use and Management. 2019, 35(2), 273-282

Spatial distribution of Pratylenchus brachyurus in a soybean area of eastern Maranhao, Brazil

Freitas JRB, Teixeira DT, Moitinho MR, da Silva Jr. JF, Siqueira DS, Barbosa BFF, Soares PLM, Pereira GT
Revista Brasileira de Ciências Agrárias- Agrária. 2019, 14(1), e5627

Straw Removal Affects Soil Physical Quality and Sugarcane Yield in Brazil

Castioni GAF, Cherubin MR, Bordonal RO, Barbosa LC, Menandro LMS, Carvalho JLN
BioEnergy Research. 2019, 12(4), 789-800

Structure-guided design combined with evolutionary diversity led to the discovery of the xylose-releasing exo-xylanase activity in the glycoside hydrolase family 43

Zanphorlin LM, deMorais MAB, Diogo JA, Domingues MN, Souza FHM, Ruller R, Murakami MT
Biotechnology and Bioengineering. 2019, 116(4), 734-744

Sustainability assessment of sugarcane production systems: SustenAgro Decision Support System

de Jesus KRE, Torquato SA, Machado PG, Zorzo CRB, Cardoso BO, Leal MRLV, Picoli MCA, Ramos RC, Dalmago GA, Capitani DHD,Duft DG, Garavito Suárez JF, Pierozzi Junior I,Trevelin LC, Moreira DA
Environmental Development. 2019, 32, 100444

Technoeconomic and life-cycle analysis of catalytically converting wet ethanol into fungible fuel blendstocks

Hannon JR, Lynd LR, Andrade O, Benavides PT, Beckham GT, Biddy MJ, Brown N, Chagas MF, Davison BH, Foust F, Junqueira TL, Laser MS, Li Z, Richard T, Tao L, Tuskan G, Wang, M, Woods J, Wyman CE
Proceedings of the National Academy of Sciences. 2019, 117(23), 12576-12583

Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler

do Nascimento LC, Yanagui K, José J, Camargo ELO, Grassi MCB, da Cunha CP, Bressiani JA, Carvalho GMA, de Carvalho CR, Prado PFV, Mieczkowski P, Pereira GAG, Carazzolle MF
DNA Research. 2019, 26(3), 205-216

A Flexible Low Cost Hydroponic System for Assessing Plant Responses to Small Molecules in Sterile Conditions

Monte-Bello CC, Araujo EF, Martins MCM, Mafra V, Silva VCH, Celente V, Caldana C
Jove-Journal of Visualized Experiments. 2018, 138, e57800

A molecular approach to drought-induced reduction in leaf CO2 exchange in drought-resistant Quercus ilex

Rodríguez-Calcerrada J, Rodrigues AM, Perdiguero P, António C, Atkin OK, Li M, Collada C, Gil L
Physiologia Plantarum. 2018, 162(4), 394-408

Alkaline sulfite pretreatment for integrated first and second generation ethanol production: A techno-economic assessment of sugarcane hybrids

Mendes FM, Vasconcelos MHV, Dias MOS, Ferraz A, Milagres AMF, Santos JC, de Jesus CDF, Watanabe MDB, Junqueira TL, Bonomi AMFLJ
Biomass & Bioenergy. 2018, 119, 314-321

Assessment of impacts on basin stream flow derived from medium-term sugarcane expansion scenarios in Brazil

Hernandes TAD, Scarpare FV, Seabra JEA
Agriculture, Ecosystems & Environment. 2018, 259, 11-18

Assessment of the recent land use change dynamics related to sugarcane expansion and the associated effects on water resources availability

Hernandes TAD, Scarpare FV, Seabra JEA
Journal of Cleaner Production. 2018, 197(1), 1328-1341

Biohydrogen production at pH below 3.0: Is it possible?

Mota VT, Ferraz Jr. ADN, Trably E, Zaiat M
Water Research. 2018, 128, 350-361

Cachaca yeast strains: alternative starters to produce beer and bioethanol

Araújo TM, Souza MT, Diniz RHS, Yamakawa CK, Soares LB, Ienczak JL, Oliveira JVC, Goldman GH, Barbosa EA, Campos ACS, Castro IM, Brandão RL
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 2018, 111(10), 1749-1766

Crop residue removal and nitrification inhibitor application as strategies to mitigate N2O emissions in sugarcane fields

Gonzaga LC, Carvalho JLN, Oliveira BG, Soares JR, Cantarella H
Biomass & Bioenergy. 2018, 119, 206-216

Detoxification of sugarcane-derived hemicellulosic hydrolysate using a lactic acid producing strain

Oliveira RA, Rossel CEV, Venus J, Rabelo SC, Maciel Filho R
Journal of Biotechnology. 2018, 278, 56-63

A novel beta-glucosidase isolated from the microbial metagenome of Lake Poraque (Amazon, Brazil)

Toyama D, e Morais MAB, Ramos FC, Zanphorlin LM, Tonoli CCC, Balula AF, Miranda FP, Almeida VM, Marana S, R, Ruller R, Murakami MT, Henrique Silva F
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. 2018, 1866(4), 569-579

Genome Sequence of Lysinibacillus sphaericus, a Lignin-Degrading Bacterium Isolated from Municipal Solid Waste Soil

Persinoti GF, Paixão DAA, Bugg TDH, Squina FM
Microbiology Resource Announcements. 2018, 6(8), e00353-18

Adenosine Kinase couples sensing of cellular potassium depletion to purine metabolism

Oliveira RR, Morales-Neto R, Rocco SA, Sforça ML, Polo CC, Tonoli CCC, Mercaldi GF, Cordeiro AT, Murakami MT, Franchini KG
Scientific Reports. 2018, 8, 11988

Carbon-nitrogen removal in a structured-bed reactor (SBRRIA) treating sewage: Operating conditions and metabolic perspectives

Moura RB, Santos CED, Okada DY, Martins TH, Ferraz Jr. ADN, Damianovic MHRZ, Foresti E
Journal of Environmental Management. 2018, 224, 19-28

Harvesting Systems, Soil Cultivation, and Nitrogen Rate Associated with Sugarcane Yield

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BioEnergy Research. 2018, 11(3), 583-591

Charge and Potential Balancing for Optimized Capacitive Deionization Using Lignin-Derived, Low-Cost Activated Carbon Electrodes

Zornitta RL, Srimuk P, Lee J, Krüner B, Aslan M, Ruotolo LAM, Presser V
ChemSusChem. 2018, 11(13), 2101-2113

How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme

Tribst AAL, de Morais MAB, Tominaga CY, Nascimento AFZ, Murakami MT, Cristianini M
Innovative Food Science & Emerging Technologies. 2018, 47, 195-203

Classification of soil respiration in areas of sugarcane renewal using decision treecultural

Farhate CVV, de Souza ZM, Oliveira SRM, Carvalho JLN, La Scala Jr. N, Santos APG
Scientia Agricola. 2018, 75(3), 216-224

Comparative material balances and preliminary technical analysis of the pilot scale sugarcane bagasse alkaline pretreatment to 2G ethanol production

Nakanishi SC, Nascimento VM, Rabelo SC, Sampaio ILM, Junqueira TL, Rocha GJM
Industrial Crops and Products. 2018, 120, 187-197

Comparison of the production of enzymes to cell wall hydrolysis using different carbon sources by Penicillium echinulaturn strains and its hydrolysis potential for lignocelullosic biomass

Schneider WDH, Gonçalves TA, Uchima CA, Reis L, Fontana RC, Squina FM, Dillon AJP, Camassola M
Process Biochemistry. 2018, 66, 162-170

Development of a Chlamydomonas reinhardtii metabolic network dynamic model to describe distinct phenotypes occurring at different CO2 levels

Mora Salguero DA, Fernández-Niño M, Serrano-Bermúdez LM, Páez Melo DO, Winck FV, Caldana C, González Barrios AF
PeerJ. 2018, 8, e5528

Different Strategies To Improve Lactic Acid Productivity Based on Microorganism Physiology and Optimum Operating Conditions

Oliveira RA, Rossel CEV, Lunelli BH, Schichi POM, Venus J, Maciel Filho R
Industrial & Engineering Chemistry Research. 2018, 57(31), 10118-10125

Diversifying the technological strategies for recovering bioenergy from the two-phase anaerobic digestion of sugarcane vinasse: An integrated techno-economic and environmental approach

Fuess LT, Klein BC, Chagas MF, Rezende MCAF, Garcia ML, Bonomi AMFLJ, Zaiat M
Renewable Energy. 2018, 122, 674-687

Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models

de Oliveira VM, de Contessoto VG, da Silva FB, Caetano DLZ, de Carvalho SJ, Leite VBP
Biophysical Journal. 2018, 114(1), 65-75

Expansion assessment of the sugarcane and ethanol production in the Llanos Orientales region in Colombia

Rueda Ordoñez DA, Leal MRLV, Bonomi AMFLJ, Cortez LAB
Biofuels Bioproducts & Biorefining-Biofpr. 2018, 12(5), 857-872

Food Storage by the Savanna Termite Cornitermes cumulans (Syntermitinae): a Strategy to Improve Hemicellulose Digestibility?

Menezes L, Alvarez TM, Persinoti GF, Franco JP, Squina FM, Moreira EA, Paixão DAA, Costa-Leonardo AM, da Silva VX, Clerici MTPS, Arab A
Microbial Ecology. 2018, 76(2), 492-505

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in Trichoderma reesei RUT-30

Borin GP, Carazzolle MF, dos Santos RAC, Riaño-Pachón DM, Oliveira JVC
Frontiers in Bioengineering and Biotechnology. 2018, 6, 151

Generalized space-time classifiers for monitoring sugarcane areas in Brazil

Luciano ACS, Picoli MCA, Rocha JV, Franco HCJ, Sanches GM, Leal MRLV, le Maire G
Remote Sensing of Environment. 2018, 215, 438-451

Harvesting fruits using a mobile platform: a case study applied to Citrus

Ferreira MD, Sanchez AC, Braunbeck OA, dos Santos EA
Engenharia Agrícola. 2018, 38(2), 293-299

Improved n-butanol production from lignocellulosic hydrolysate by Clostridium strain screening and culture-medium optimization

Magalhães BL, Grassi MCB, Pereira GAG, Brocchi M
Biomass & Bioenergy. 2018, 108, 157-166

Integration of microalgae production with industrial biofuel facilities: A critical review

Klein BC, Bonomi AMFLJ, Maciel Filho R
Renewable & Sustainable Energy Reviews. 2018, 82, 1376-1392

Iron-Catalyzed Reductive Amination from Levulinic and Formic Acid Aqueous Solutions: An Approach for the Selective Production of Pyrrolidones in Biorefinery Facilities

Metzker G, Dias RMP, Burtoloso ACB
ChemistrySelect. 2018, 3(2), 368-372

Isolation and surface modification of cellulose nanocrystals from sugarcane bagasse waste: From a micro- to a nano-scale view

Ferreira FV, Mariano M, Rabelo SC, Gouveia RF, Lona LMF
Applied Surface Science. 2018, 436, 1113-1122

Laccase production in bioreactor scale under saline condition by the marine-derived basidiomycete Peniophora sp CBMAI 1063

Mainardi PH, Feitosa VA, de Paiva LBB, Bonugli- Santos RC, Squina FM, Pessoa Jr. A, Sette LD
Fungal Biology. 2018, 122(5), 302-309

Laccase-derived lignin compounds boost cellulose oxidative enzymes AA9

de Paiva LBB, Squina FM, Felby C, Cannella D
Biotechnology for Biofuels. 2018, 11, 10

Land availability for sugarcane derived jet-biofuels in Sao Paulo Brazil

Martini DZ, Aragão LEOC, Sanches ID'A, Galdos MV, da Silva CRU, Dalla-Nora EL
Land Use Policy. 2018, 70, 256-262

Large-scale DAE-constrained optimization applied to a modified spouted bed reactor for ethylene production from methane

Yancy- Caballero D, Bieglerr LT, Guirardello R
Computers & Chemical Engineering. 2018, 113, 162-183

Nanostructural Evolution of Sugarcane Rind and Pith Submitted to Hydrothermal Pretreatments

de Oliveira MM, Curvelo AAS, Driemeier CE
Journal of Renewable Materials. 2018, 6(2), 152-159

Life cycle assessment addressing health effects of particulate matter of mechanical versus manual sugarcane harvesting in Brazil

Du C, Kulay L, Cavalett O, Dias L, Freire F
International Journal of Life Cycle Assessment. 2018, 23(4), 787-799

Network of proteins, enzymes and genes linked to biomass degradation shared by Trichoderma species

Horta MAC, Ferreira Filho JA, Murad NF, Santos EO, Santos CA, Mendes JS, Brandão MM, Azzoni SF, Souza AP
Scientific Reports. 2018, 8, 1341

Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization

Moraes EC, Alvarez TM, Persinoti GF, Tomazetto G, de Paiva LBB, Paixão DAA, Ematsu GC, Aricetti JA, Caldana C, Dixon N, Bugg TDH, Squina FM
Biotechnology for Biofuels. 2018, 11, 75

Liquid-liquid equilibrium data for ternary systems of water plus acetic acid plus acetate esters at 293.2 K and 303.2 K and approximate to 95 kPa

Roque LR, Pinto RR, de Oliveira LH, Rabelo SC
Fluid Phase Equilibria. 2018, 463, 34-37

Nitrogen recovery efficiency for corn intercropped with palisade grass

de Almeida REM, Favarin JL, Otto R, Franco HCJ, Reis AFB, Moreira LA, Trivelin PCO
Bragantia. 2018, 77(4), 557-566

Location of water in fresh sugarcane bagasse observed by synchrotron X-ray microtomography

Driemeier CE, Ling LY, Yancy-Caballero D, Mantelatto PE, Dias CSB, Archilha NL
PloS One. 2018, 13(12), e0208219

Nitrogen supply influences photosynthesis establishment along the sugarcane leaf

Bassi D, Menossi M, Mattiello L
Scientific Reports. 2018, 8, 2327

Mapping land use changes resulting from biofuel production and the effect of mitigation measures

Van der Hilst F, Verstegen JA, Woltjer G, Smeets EMW, Faaij A
Global Change Biology Bioenergy. 2018, 10(11), 804-824

Non-Native Cooperative Interactions Modulate Protein Folding Rates

Silva FB, Contessoto VG, de Oliveira VM, Clarke J, Leite VBP
Journal of Physical Chemistry B. 2018, 122(48), 10817-10824

Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars

Ferreira DA, Martins MCM, Cheavegatti-Gianotto A, Carneiro MS, Amadeu RR, Aricetti JA, Wolf LD, Hoffmann HP, Abreu LGF, Caldana C
Frontiers in Plant Science. 2018, 9, 857

Phosphate Sources and Their Placement Affecting Soil Phosphorus Pools in Sugarcane

dos Santos VR, Soltangheisi A, Franco HCJ, Kölln OT, Vitti AC, Dias CTS, Pavinato PS
Agronomy-Basel. 2018, 8(12), 283

Microbial Communities of the Gut and Nest of the Humus- and Litter-Feeding Termite Procornitermes araujoi (Syntermitinae)

Moreira EA, Alvarez TM, Persinoti GF, Paixão DAA, Menezes LR, Cairo JPLF, Squina FM, Costa-Leonardo AM, Carrijo T, Arab A
Current Microbiology. 2018, 75(12), 1609-1618

Potential of apparent soil electrical conductivity to describe the soil pH and improve lime application in a clayey soil

Sanches GM, Magalhães PSG, Remacre AZ, Franco HCJ
Soil & Tillage Research. 2018, 175, 217-225

Microbiota modification by probiotic supplementation reduces colitis associated colon cancer in mice

Mendes MCS, Paulino DSM, Brambilla SR, Camargo JA, Persinoti GF, Carvalheira JB
World Journal of Gastroenterology. 2018, 24(18), 1995-2008

Multiscale Alterations in Sugar Cane Bagasse and Straw Submitted to Alkaline Deacetylation

Lima CS, Rabelo SC, Ciesielski PN, Roberto IC, Rocha GJM, Driemeier CE
ACS Sustainable Chemistry & Engineering. 2018, 6(3), 3796-3804

ScGAI is a key regulator of culm development in sugarcane

Tavares RG, Lakshmanan P, Peiter E, O'Connell A, Caldana C, Vicentini R, Soares JSM, Menossi M
Journal of Experimental Botany. 2018, 69(16), 3823-3837

Social life cycle assessment of first and second-generation ethanol production technologies in Brazil

Souza AM, Watanabe MDB, Cavalett O, Ugaya CML, Bonomi AMFLJ
The International Journal of Life Cycle Assessment. 2018, 23(3), 617-628

New contributions for industrial n-butanol fermentation: An optimized Clostridium strain and the use of xylooligosaccharides as a fermentation additive

Grassi MCB, Carazzolle MF, Nakagawa BT, Ferrari A, Nagamatsu ST, dos Santos CR, Murakami MT, Pirolla RAS, Pereira GAG
Biomass & Bioenergy. 2018, 119, 304-313

Soil physical quality response to sugarcane straw removal in Brazil: A multi-approach assessment

Castioni GAF, Cherubin MR, Menandro LMS, Sanches GM, Bordonal RO, Barbosa LC, Franco HCJ, Carvalho JLN
Soil & Tillage Research. 2018, 184, 301-309

Soil texture affects root penetration in Oxisols under sugarcane in Brazil

Barbosa LC, de Souza ZM, Franco HCJ, Otto R, Rossi Neto J, Garside AL, Carvalho JLN
Geoderma Regional. 2018, 13, 15-25

Sugarcane yield and soil carbon response to straw removal in south-central Brazil

Bordonal RO, Menandro LMS, Barbosa LC, Lal R, Milori DMBP, Kölln OT, Franco HCJ, Carvalho JLN
Geoderma. 2018, 328, 79-90

Structural and functional characterisation of multi-copper oxidase CueO from lignin-degrading bacterium Ochrobactrum sp reveal its activity towards lignin model compounds and lignosulfonate

Granja- Traves RS, Wilkinson RC, Persinoti GF, Squina FM, Fülop V, Bugg TDH
FEBS Journal. 2018, 285(9), 1684-1700

Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility

Souza WR, Martins PK, Freeman J, Pellny TK, Michaelson LV, Sampaio BL, Vinecky F, Ribeiro AP, da Cunha BADB, Kobayashi AK, de Oliveira PA, Campanha RB, Pacheco TF, Martarello DCI, Marchiosi R, Ferrarese-Filho O, Santos WD, Tramontina R, Squina FM, Centeno, DC, Gaspar M, Braga, MR, Tiné, MAS, Ralph, J, Mitchell, RAC, Molinari, HBC
New Phytologist. 2018, 218(1), 81-93

Structural basis of exo-β-mannanase activity in the GH2 family

Domingues MN, Souza FHM, Vieira PS, de Morais MAB, Zanphorlin LM, dos Santos CR, Pirolla RAS, Honorato RV, de Oliveira PSL, Gozzo FC, Murakami MT
Journal of Biological Chemistry. 2018, 293(35), 13636-13649

Sustainability of sugarcane production in Brazil. A review

Bordonal RO, Carvalho JLN, Lal R, de Figueiredo EB, Oliveira BG, La Scala Jr. N
Agronomy for Sustainable Development. 2018, 38(2), 13-33

Sugar Extraction via Moving-Bed Diffusers in Ethanol Production Industry: Phenomenological Modeling and Finite-Volumes Simulation

Geraldo VC, de Toledo ECV, Maciel Filho R, Bonomi AMFLJ, de Morais ER
Industrial & Engineering Chemistry Research. 2018, 57(41), 13769-13782

Sustainable intensification of sugarcane production under irrigation systems, considering climate interactions and agricultural efficiency

Cardozo NP, Bodonal RO, La Scala Jr N
Journal of Cleaner Production. 2018, 204, 861-871

Techno-economic analysis of the industrial production of a low-cost enzyme using E. coli: the case of recombinant beta-glucosidase

Ferreira RG, Azzoni AR, Azzoni SF
Biotechnology for Biofuels. 2018, 11, 81

Techno-economic and environmental assessment of renewable jet fuel production in integrated Brazilian sugarcane biorefineries

Klein BC, Chagas MF, Junqueira TL, Rezende MCAF, Cardoso Tde F, Cavalett O, Bonomi AMFLJ
Applied Energy. 2018, 209, 290-305

Temporal dynamics and metabolic correlation between lactate-producing and hydrogen-producing bacteria in sugarcane vinasse dark fermentation: The key role of lactate

Fuess LT, Ferraz Jr. ADN, Machado CB, Zaiat M
Bioresource Technology. 2018, 247, 426-433

The Arrangement and Spacing of Sugarcane Planting Influence Root Distribution and Crop Yield

Rossi Neto J, de Souza ZM, Kölln OT, Carvalho JLN, Ferreira DA, Castioni GAF, Barbosa LC, Castro SGQ, Braunbeck OA, Garside AL, Franco HCJ
BioEnergy Research. 2018, 11(2), 291-304

The Aspergillus nidulans Pyruvate Dehydrogenase Kinases Are Essential To Integrate Carbon Source Metabolism

Ries LNA, Assis LJ, Rodrigues FJS, Caldana C, Rocha MC, Malavazi I, Bayram O, Goldman GH
G3-Genes Genomes Genetics. 2018, 8(7), 2445-2463

The Duality of the MAPK Signaling Pathway in the Control of Metabolic Processes and Cellulase Production in Trichoderma reesei

De Paula RG, Antonieto ACC, Carraro CB, Lopes DCB, Persinoti GF, Peres NTA, Martinez-Rossi NM, Silva-Rocha R, Silva RN
Scientific Reports. 2018, 8, 14931

The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans

dos Santos CR, Giuseppe PO, Souza FHM, Zanphorlin LM, Domingues MN, Pirolla RAS, Honorato RV, Tonoli CCC, de Morais MAB, Martins VPM, Fonseca LM, Büchli F, de Oliveira PSL, Gozzo FC, Murakami MT
Biotechnology for Biofuels. 2018, 11, 223

The potential for RGB images obtained using unmanned aerial vehicle to assess and predict yield in sugarcane fields

Sanches GM, Duft DG, Kölln OT, Luciano ACS, Castro SGQ, Okuno FM, Franco HCJ
International Journal of Remote Sensing. 2018, 39(15-16), 5402-5414

The target of rapamycin kinase affects biomass accumulation and cell cycle progression by altering carbon/nitrogen balance in synchronized Chlamydomonas reinhardtii cells

Jüppner J, Mubeen U, Leisse A, Caldana C, Wiszniewski A, Steinhauser D, Giavalisco P
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TKSA-MC: A web server for rational mutation through the optimization of protein charge interactions

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Proteins-Structure Function and Bioinformatics. 2018, 88(11), 1184-1188

Toward an understanding of the increase in enzymatic hydrolysis by mechanical refining

de Assis T, Huang S, Driemeier CE, Donohoe BS, Kim C, Kim SH, Gonzalez R, Jameel H, Park S
Biotechnology for Biofuels. 2018, 11, 289

Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse

Gouvea PF, Bernardi AV, Gerolamo LE, Santos ESS, Riaño-Pachón DM, Uyemura SA, Dinamarco TM
BMC Genomics. 2018, 19, 232

Unraveling the cellulolytic and hemicellulolytic potential of two novel Streptomyces strains

de Melo RR, Tomazetto G, Persinoti GF, Sato HH, Ruller R, Squina FM
Annals of Microbiology. 2018, 68(10), 677-688

Use of data mining techniques to classify soil CO2 emission induced by crop management in sugarcane field

Farhate CVV, de Souza ZM, Oliveira SRM, Tavares RLM, Carvalho JLN
PloS One. 2018, 13(3), e0193537

Vinasse fertirrigation alters soil resistome dynamics: an analysis based on metagenomic profiles

Braga LPP, Alves RF, Dellias MTF, Navarrete AA, Basso TO, Tsai SM
BioData Mining. 2017, 10, 17

Xyloglucan breakdown by endo-xyloglucanase family 74 from Aspergillus fumigatus

Damásio ARL, Rubio MV, Gonçalves TA, Persinoti GF, Segato F, Prade RA, Contesini FJ, Souza AP, Buckeridge MS, Squina FM
Applied Microbiology and Biotechnology. 2017, 101(7), 2893-2903

Aspergillusfumigatus protein phosphatase PpzA is involved in iron assimilation, secondary metabolite production, and virulence

Manfiolli AO, de Castro PA, dos Reis TF, Dolan SK, Doyle S, Jones GW, Riaño-Pachón DM, Ulas M, Noble LM, Mattern DJ, Brakhage AA, Valiante V, Silva-Rocha R, Bayram O, Goldman GH
Cellular Microbiology. 2017, 19(12), e12770

Best Practices of Nitrogen Fertilization Management for Sugarcane Under Green Cane Trash Blanket in Brazil

Castro SGQ, Decaro Jr. ST, Franco HCJ, Magalhães PSG, Garside AL, Mutton MA
Sugar Tech. 2017, 19(1), 51-56

Biochemical and biophysical properties of a metagenome-derived GH5 endoglucanase displaying an unconventional domain architecture

Pimentel AC, Ematsu GC, Liberato MV, Paixão DAA, Cairo JPLF, Mandelli F, Tramontina R, Gandin CA, Oliveira Neto M, Squina FM, Alvarez TM
International Journal of Biological Macromolecules. 2017, 99, 384-393

Biotechnological production of value-added compounds by ustilaginomycetous yeasts

Paulino BN, Pessoa MG, Molina G, Kaupert Neto AA, Oliveira JVC, Mano MCR, Pastore GM
Applied Microbiology and Biotechnology. 2017, 101, 7789-7809

Changes in quantity and quality of soil carbon due to the land-use conversion to sugarcane (Saccharum officinarum) plantation in southern Brazil

Bodonal RO, Lal R, Ronquim CC, de Figueiredo EB, Carvalho JLN, Maldonado Jr. W, Milori DMBP, La Scala Jr. N
Agriculture Ecosystems & Environment. 2017, 240, 54-65

Conversion of an inactive xylose isomerase into a functional enzyme by co-expression of GroEL-GroES chaperonins in Saccharomyces cerevisiae

Temer B, dos Santos LV, Negri VA, Galhardo JP, Magalhães PHM, José J, Marschalk C, Corrêa TLR, Carazzolle MF, Pereira GAG
BMC Biotechnology. 2017, 17, 71

Effect of temperature on sugarcane ethanol fermentation: Kinetic modeling and validation under very-high-gravity fermentation conditions

Rivera EC, Yamakawa CK, Saad MBW, Atala DIP, Ambrosio WB, Bonomi AMFLJ, Nolasco Jr. J, Rossel CEV
Biochemical Engineering Journal. 2017, 119, 42-51

Environmental impacts of technology learning curve for cellulosic ethanol in Brazil

Cavalett O, Chagas MF, Junqueira TL, Watanabe MDB, Bonomi AMFLJ
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Evaluation of the use of protic ionic liquids on biomass fractionation

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Fuel. 2017, 206, 145-154

Fermentation strategy for second generation ethanol production from sugarcane bagasse hydrolyzate by Spathaspora passalidarum and Scheffersomyces stipitis

Nakanishi SC, Soares LB, Biazi LE, Nascimento VM, Costa AC, Rocha GJM, Ienczak JL
Biotechnology and Bioengineering. 2017, 114(10), 2211-2221

Genome-wide transcriptome analysis of Aspergillus fumigatus exposed to osmotic stress reveals regulators of osmotic and cell wall stresses that are SakAHOG1 and MpkC dependent

Silva LP, Castro PA, dos Reis TF, Paziani MH, Kress MRvon Z, Riaño-Pachón DM, Hagiwara D, Ries LNA, Brown NA, Goldman GH
Cellular Microbiology. 2017, 19(4), e12681

454-Pyrosequencing analysis of highly adapted azo dye-degrading microbial communities in a two-stage anaerobic-aerobic bioreactor treating textile effluent

Kochling T, Ferraz Jr. ADN, Florencio L, Kato MT, Gavazza S
Environmental Technology. 2017, 38(6), 687-693

Height estimation of sugarcane using an unmanned aerial system (UAS) based on structure from motion (SfM) point clouds

de Souza CHW, Lamparelli RAC, Rocha JV, Magalhães PSG
International Journal of Remote Sensing. 2017, 38(8-10), 2218-2230

Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism

Seki M, Ohara T, Hearn TJ, Frank A, da Silva VCH, Caldana C, Webb AAR, Satake A
Scientific Reports. 2017, 7, 8305

High value added lipids produced by microorganisms: a potential use of sugarcane vinasse

Fernandes BS, Vieira JPF, Contesini FJ, Mantelatto PE, Zaiat M, Pradella JGC
Critical Reviews in Biotechnology. 2017, 37(8), 1048-1061

Agronomic and environmental implications of sugarcane straw removal: a major review

Carvalho JLN, Nogueirol RC, Menandro LMS, Bodonal RO, Borges CD, Cantarella H, Franco HCJ
Global Change Biology Bioenergy. 2017, 9(7), 1181-1195

Hydrolysis of cellulose from sugarcane bagasse by cellulases from marine-derived fungi strains

Santos DA, de Oliveira MM, Curvelo AAS, Fonseca LP, Porto ALM
International Biodeterioration & Biodegradation. 2017, 121, 66-78

Alkaline Pretreatment Severity Leads to Different Lignin Applications in Sugar Cane Biorefineries

Menezes FF, Rencoret J, Nakanishi SC, Nascimento VM, Silva VFN, Gutiérrez A, Del Rio JC, Rocha GJM
ACS Sustainable Chemistry & Engineering. 2017, 5, 5702-5712

Integrated furfural and first generation Bioethanol production: processsimulation and technoeconomic analysis

Silva JFL, Selicani MA, Junqueira TL, Klein BC, Vaz Jr. S, Bonomi AMFLJ
Brazilian Journal of Chemical Engineering. 2017, 34(3), 623-634

Anabioplus: a New Package for Parameter Estimation and Simulation of Bioprocesses

Oliveira CM, de Jesus CDF, Ceneviva LV, Silva FH, Cruz AJG, Costa CBB, Badino AC
Brazilian Journal of Chemical Engineering. 2017, 34(4), 1065-1082

Kinetic Study of the Acid Post-hydrolysis of Xylooligosaccharides from Hydrothermal Pretreatment

Nakasu PYS, Chagas MF, Costa AC, Rabelo SC
BioEnergy Research. 2017, 10(4), 1045-1056

Analysis of socioeconomic and environmental sensitivity of sugarcane cultivation using a Geographic Information System

Machado PG, Rampazo NAM, Picoli MCA, Miranda CG, Duft DG, de Jesus KRE
Land Use Policy. 2017, 69, 64-74

Lipid production from hemicellulose hydrolysate and acetic acid by Lipomyces starkeyi and the ability of yeast to metabolize inhibitors

Xavier MCA, Coradini ALV, Deckmann AC, Franco TT
Biochemical Engineering Journal. 2017, 118, 11-19

Liquid fertilizer application to ratoon cane using a soil punching method

da Silva MJ, Franco HCJ, Magalhães PSG
Soil & Tillage Research. 2017, 165, 279-285

Assessment of pre-treatment technologies for bioethanol production from sugarcane bagasse considering economics and environmental impact

Crimes J, Isafiade A, Fraser DM, Short M, Bonomi AMFLJ
Asia-Pacific Journal of Chemical Engineering. 2017, 12(2), 212-229

Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission

Cataldi TR, Schaker PDC, Peters LP, Labate CA, Caldana C, Vitorello CBM
Frontiers in Plant Science. 2017, 8, 882

Assessment of VHG (Very High Gravity) ethanol fermentation in continuous multistage with cell recovery, reactivation and recycling using a blend of juice and molasses from sugarcane as raw material

Yamakawa CK, Atala DIP, Nolasco Jr. J, Rossel CEV
Sugar Industry-Zuckerindustrie. 2017, 142(4), 212-216

Methane emissions from sugarcane vinasse storage and transportation systems: Comparison between open channels and tanks

Oliveira BG, Carvalho JLN, Chagas MF, Cerri CEP, Cerri CC, Feigl BJ
Atmospheric Environment. 2017, 159, 135-146

Potassium Biphthalate Buffer for Ph control to optimize glycosyl hydrolase production In shake flasks using filamentous Fungi

Costa PS, Robl D, Costa IC, Lima DJS, Costa AC, Pradella JGC
Brazilian Journal of Chemical Engineering. 2017, 34(2), 439-450

Potential impacts on local quality of life due to sugarcane expansion: a case study based on panel data analysis

Machado PG, Walter A, Picoli MCA, João CG
Environment Development and Sustainability. 2017, 19(5), 2069-2092

Process development and techno-economic analysis of bio-based succinic acid derived from pentoses integrated to a sugarcane biorefinery

Klein BC, Silva JFL, Junqueira TL, Rabelo SC, Arruda PV, Ienczak JL, Mantelatto PE, Pradella JGC, Vaz Jr. S, Bonomi AMFLJ
Biofuels Bioproducts & Biorefining-Biofpr. 2017, 11(6), 1051-1064

Pyrrole-indolinone SU11652 targets the nucleoside diphosphate kinase from Leishmania parasites

Vieira PS, Souza TACB, Honorato RV, Zanphorlin LM, Severiano KU, Rocco SA, Oliveira AHC, Cordeiro AT, de Oliveira PSL, Giuseppe PO, Murakami MT
Biochemical and Biophysical Research Communications. 2017, 488(3), 461-465

Scale up of xylitol production from sugarcane bagasse hemicellulosic hydrolysate by Candida guilliermondii FTI 20037

Arruda PV, Santos JC, Rodrigues RCLB, Silva DDV, Yamakawa CK, Rocha GJM, Nolasco Jr. J, Pradella JGC, Rossel CEV, Felipe MGA
Journal of Industrial and Engineering Chemistry. 2017, 47, 297-302

Combining an accelerated deployment of bioenergy and land use strategies: Review and insights for a post-conflict scenario in Colombia

Gonzalez-Salazar MA, Venturini M, Poganietz W-R, Finkenrath M, Leal MRLV
Renewable & Sustainable Energy Reviews. 2017, 73, 159-177

Structural and functional characterization of a highly secreted alpha-L-arabinofuranosidase (GH62) from Aspergillus nidulans grown on sugarcane bagasse

Contesini FJ, Liberato MV, Rubio MV, Calzado F, Zubieta MP, Riaño-Pachón DM, Squina FM, Bracht F, Skaf MS, Damásio ARL
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. 2017, 1865(12), 1758-1769

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram O, Benocci T, Braus-Stromeyer SA, Caldana C, Canovas D, Cerqueira GC, Chen F, Choi G, Clum A, dos Santos RAC, Damásio ARL, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karanyi Z, Krasevec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Todd RB, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár P, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park Hee-SooPerrone G, Piumi F, Punt PJ, Ram AFJ, Ramos A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepcic K, Shelest E, Sherlock G, SophianopoulouV, Squina FM, Sun H, Susca A, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JVC, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV
Genome Biology. 2017, 18(1), 28

Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

Borin GP, Sanchez CC, Santana ES, Zanini GK, dos Santos RAC, Pontes AO, de Souza AT, Dal'Mas RMTS, Riaño-Pachón DM, Goldman GH, Oliveira JVC
BMC Genomics. 2017, 18, 501

Sugarcane outgrower schemes in Mozambique: Findings from the field

Leite JGDB, Leal MRLV, Langa FM
International Sugar Journal. 2017, 119(1427), 896-900

Comprehensive assessment of sugarcane straw: implications for biomass and bioenergy production

Menandro LMS, Cantarella H, Kölln OT, Pimenta MTB, Franco HCJ, Sanches GM, Rabelo SC, Carvalho JLN
Biofuels Bioproducts & Biorefining-Biofpr. 2017, 11(3), 488-504

Sugarcane Straw Reinforced Castor Oil Polyurethane Composites: Fiber Characterization and Analysis of Composite Properties

Mileo PC, Rocha GJM, Gonçalves AR
Journal of Natural Fibers. 2017, 14(4), 498-509

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho JLN, Hudiburg TW, Franco HCJ, DeLucia EH
Global Change Biology Bioenergy. 2017, 9(8), 1333-1343

Sustainable and Integrated Bioenergy Assessment for Latin America, Caribbean and Africa (SIByl-LACAf): The path from feasibility to acceptability

Nogueira LAH, Souza LGA, Cortez LAB, Leal MRLV
Renewable & Sustainable Energy Reviews. 2017, 76, 292-308

Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-beta-xylanase activity

Polikarpov I, Mello BLSP, Riaño-Pachón DM, Azevedo ER, Guimarães FEG, Espírito-Santo M, McQueen-Mason SJ, Bruce NC, Alessi AM
Biotechnology for Biofuels. 2017, 10, 254

Draft genome sequence of Streptomyces sp strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil

de Melo RR, Persinoti GF, Paixão DAA, Squina FM, Ruller R, Sato HH
Brazilian Journal of Microbiology. 2017, 48(4), 612-614

Techno-economic analysis and climate change impacts of sugarcane biorefineries considering different time horizons

Junqueira TL, Chagas MF, de Gouveia VLR, Rezende MCAF, Watanabe MDB, de Jesus CDF, Cavalett O, Milanez AY, Bonomi AMFLJ
Biotechnology for Biofuels. 2017, 10, 50

Dynamics of lipids and metabolites during the cell cycle of Chlamydomonas reinhardtii

Jüppner J, Mubeen U, Leisse A, Caldana C, Brust H, Steup M, Herrmann M, Steinhauser D, Giavalisco P
Plant Journal. 2017, 92(2), 331-343

Techno-economic assessment of biorefinery technologies for aviation biofuels supply chains in Brazil

Alves CM, Valk M, de Jong S, Bonomi AMFLJ, van der Wielen LAM, Mussatto SI
Biofuels Bioproducts & Biorefining-Biofpr. 2017, 11(1), 67-91

Economic, environmental, and social impacts of different sugarcane production systems

Cardoso TF, Watanabe MDB, Souza AM, Chagas MF, Cavalett O, de Morais ER, Nogueira LAH, Leal MRLV, Braunbeck OA, Cortez LAB, Bonomi AMFLJ
Biofuels Bioproducts & Biorefining-Biofpr. 2017, 12(1), 68-82

Techno-economic impacts of varied compositional profiles of sugarcane experimental hybrids on a biorefinery producing sugar, ethanol and electricity

Mendes FM, Dias MOS, Ferraz A, Milagres AMF, Santos JC, Bonomi AMFLJ
Chemical Engineering Research & Design. 2017, 125, 72-78

Effect of dynamic high pressure on functional and structural properties of bovine serum albumin

Maresca P, Ferrari G, de Leite BR, Zanphorlin LM, Ribeiro LR, Murakami MT, Cristianini M
Food Research International. 2017, 99, 784-754

The completely annotated genome and comparative genomics of the Peptoniphilaceae bacterium str. ING2-D1G, a novel acidogenic bacterium isolated from a mesophilic biogas reactor

Tomazetto G, Hahnke S, Wibberg D, Blom J, Maus I, Puehler A, Klocke M, Schluter A
Journal of Biotechnology. 2017, 257, 178-186

Unraveling the influence of the COD/sulfate ratio on organic matter removal and methane production from the biodigestion of sugarcane vinasse

Kiyuna LSM, Fuess LT, Zaiat M
Bioresource Technology. 2017, 232, 103-112

Effect of the plasma excitation power on the properties of SiOxCyHz films deposited on AISI 304 steel

Santos NM, Gonçalves TM, Amorim J, Freire CMA, Bortoleto JRR, Durrant SF, Ribeiro RP, da Cruz NC, Rangel EC
Surface & Coatings Technology. 2017, 311, 127-137

Use of the Decision Tree Technique to Estimate Sugarcane Productivity Under Edaphoclimatic Conditions

Rossi Neto J, de Souza ZM, Oliveira SRM, Kölln OT, Ferreira DA, Carvalho JLN, Braunbeck OA, Franco HCJ
Sugar Tech. 2017, 19(6), 662-668

Valorization of Residual Biomasses from the Agri-Food Industry by Subcritical Water Hydrolysis Assisted by CO2

Prado JM, Vardanega R, Nogueira GC, Forster-Carneiro T, Rostagno MA, Maugeri Filho F, Meireles MAA
Energy & Fuels. 2017, 31(3), 2838-2846

Experimental design and metabolic flux analysis tools to optimize industrially relevant Haemophilus influenzae type b growth medium

Zangirolami TC, da Silva MR, Portela CAF, Albani SMF, Paiva PR, Tanizaki MM
Biotechnology Progress. 2017, 33(6), 1508-1519

Exploring the metabolic and physiological diversity of native microalgal strains (Chlorophyta) isolated from tropical freshwater reservoirs

Rocha RP, Machado M, Vaz MGMV, Vinson CC, Leite M, Richard R, Mendes LBB, Araújo WL, Caldana C, Martins MA, Williams TCR, Nunes-Nesi A
Algal Research-Biomass Biofuels and Bioproducts. 2017, 28, 139-150

Feruloyl esterase from Aspergillus clavatus improves xylan hydrolysis of sugarcane bagasse

de Oliveira DM, Salvador VH, Mota TR, Finger-Teixeira A, Almeida RF, Paixão DAA, Souza AP, Buckeridge MS, Marchiosi R, Ferrarese-Filho O, Squina FM, Santos WD
AIMS Bioengineering. 2017, 4(1), 1-11

Financial analyses of potential biojet fuel production technologies

Pereira LG, MacLean HL, Saville BA
Biofuels Bioproducts & Biorefining-Biofpr. 2017, 11(4), 665-681

Hydrous bioethanol production from sugarcane bagasse via energy self-sufficient gasification-fermentation hybrid route: Simulation and financial analysis

Medeiros EM, Posada JA, Noorman H, Osseweijer P, Maciel Filho R
Journal of Cleaner Production. 2017, 168, 1625-1635

Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane

Nobile PM, Bottcher A, Mayer JLS, Brito MS, dos Anjos IA, Landell MGA, Vicentini R, Creste S, Riaño-Pachón DM, Mazzafera P
Molecular Genetics and Genomics. 2017, 292(6), 1323-1340

Integrated analysis of recombinant BPV-1 L1 protein for the production of a bovine papillomavirus VLP vaccine

Módolo DG, Araldi RP, Mazzuchelli-de-Souza J, Pereira A, Pimenta DC, Zanphorlin LM, Beçak W, Menossi M, Stocco PK, de Carvalho RF
Vaccine. 2017, 35(12), 1590-1593

New Heterofunctional Supports Based on Glutaraldehyde-Activation: A Tool for Enzyme Immobilization at Neutral pH

de Melo RR, Alnoch RC, Vilela AFL, de Souza EM, Krieger N, Ruller R, Sato HH, Mateo C
Molecules. 2017, 22(7), 1088

The Coptotermes gestroi aldo-keto reductase: a multipurpose enzyme for biorefinery applications

Tramontina R, Cairo JPLF, Liberato MV, Mandelli F, de Sousa AS, Santos SC, Rabelo SC, Campos B, Ienczak JL, Ruller R, Damásio ARL, Squina FM
Biotechnology for Biofuels. 2017, 10, 4

The dual strategy of the bromeliad Pitcairnia burchellii Mez to cope with desiccation

Vieira EA, Centeno DC, Freschi L, Silva EA, Braga MR
Environmental and Experimental Botany. 2017, 143, 135-148

The low affinity glucose transporter HxtB is also involved in glucose signalling and metabolism in Aspergillus nidulans

dos Reis TF, Nitsche BM, de Lima PBA, Assis LJ, Mellado L, Harris SD, Meyer V, dos Santos RAC, Riaño-Pachón DM, Ries LNA, Goldman GH
Scientific Reports. 2017, 7, 45073

The relation between xyrl overexpression in Trichoderma harzianum and sugarcane bagasse saccharification performance

Delabona PS, Rodrigues GN, Zubieta MP, Ramoni J, Codima CA, Lima DJS, Farinas CS, Pradella JGC, Seiboth B
Journal of Biotechnology. 2017, 246, 24-32

The Role of Small-Scale Biofuel Production in Brazil: Lessons for Developing Countries

KubotaAM, Leite JGDB, Watanabe MDB, Cavalett O, Leal MRLV, Cortez LAB
Agriculture-Basel. 2017, 7(7), 61

Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis

Mandelli F, Couger MB, Paixão DAA, Machado CB, Carnielli CM, Aricetti JA, Polikarpov I, Caldana C, Prade R, Paes Leme AF, Mercadanrte AZ, Riaño-Pachón DM, Squina FM
Extremophiles. 2017, 21(4), 775-788

Thermophilic two-phase anaerobic digestion using an innovative fixed-bed reactor for enhanced organic matter removal and bioenergy recovery from sugarcane vinasse

Fuess LT, Kiyuna LSM, Ferraz Jr. ADN, Persinoti GF, Squina FM, Garcia ML, Zaiat M
Applied Energy. 2017, 189, 480-491

Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression

Daly P, Van Munster JM, Kokolski M, Sang F, Blythe MJ, Malla S, Oliveira JVC, Goldman GH, Archer DB
Fungal Genetics and Biology. 2017, 102, 4-21

Tunable Structural and Mechanical Properties of Cellulose Nanofiber Substrates in Aqueous Conditions for Stem Cell Culture

Smyth M, Fournier C, Driemeier CE, Picart C, Foster EJ, Bras J
Biomacromolecules. 2017, 18(7), 2034-2044

Two-stage fractionation of sugarcane bagasse by autohydrolysis and glycerol organosolv delignification in a lignocellulosic biorefinery concept

Meighan BN, Lima DRS, Cardoso WJ, Baêta BEL, Adarme OFH, Santucci BS, Pimenta MTB, Aquino SF, Gurgel LVA
Industrial Crops and Products. 2017, 108, 431-441

A novel cold-adapted and glucose-tolerant GH1 beta-glucosidase from Exiguobacterium antarcticum B7

Crespim E, Zanphorlin LM, Souza FHM, Diogo JA, Gazolla AC, Machado CB, Figueiredo F, de Sousa AS, Nóbrega F, Pellizari VH, Murakami MT, Ruller R
International Journal of Biological Macromolecules. 2016, 82, 375-380

A study of the production of cellulose nanocrystals through subcritical water hydrolysis

Novo LP, Bras J, Garcia A, Belgacem N, Curvelo AAS
Industrial Crops and Products. 2016, 93, 88-95

A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination

Ribeiro LF, Tullman J, Nicholes N, Silva SRB, Vieira DS, Ostermeier M, Ward RJ
Biotechnology for Biofuels. 2016, 9, 119

Acid post-hydrolysis of xylooligosaccharides from hydrothermal pretreatment for pentose ethanol production

Nakasu PYS, Ienczak JL, Costa AC, Rabelo SC
Fuel. 2016, 185, 73-84

Acidification treatment of lignin from sugarcane bagasse results in fractions of reduced polydispersity and high free-radical scavenging capacity

de Paiva LBB, Mandelli F, Mercadanrte AZ, Rocha GJM, Rocco SA, Craievich AF, Gonçalves AR, Centeno DC, Oliveira Neto M, Squina FM
Industrial Crops and Products. 2016, 83, 94-103

Analysis of Sensitive CO2 Pathways and Genes Related to Carbon Uptake and Accumulation in Chlamydomonas reinhardtii through Genomic Scale Modeling and Experimental Validation

Winck FV, Páez Melo DO, Riaño-Pachón DM, Martins MCM, Caldana C, González Barrios AF
Frontiers in Plant Science. 2016, 7, 43

Assessing potential impacts of sugarcane production on water resources: A case study in Brazil

Guarenghi MM, Walter A
Biofuels Bioproducts & Biorefining-Biofpr. 2016, 10(6), 699-709

Botryococcus braunii for biodiesel production

Tasic MB, Pinto LFR, Klein BC, Veljkovic VB, Maciel Filho R
Renewable & Sustainable Energy Reviews. 2016, 64, 260-270

Characterization and Low-Resolution Structure of an Extremely Thermostable Esterase of Potential Biotechnological Interest from Pyrococcus furiosus

Mandelli F, Gonçalves TA, Gandin CA, Oliveira ACP, Oliveira Neto M, Squina FM
Molecular Biotechnology. 2016, 58(11), 757-766

Contribution of N from green harvest residues for sugarcane nutrition in Brazil

Ferreira DA, Franco HCJ, Otto R, Vitti AC, Fortes C, Faroni CE, Garside AL, Trivelin PCO
Global Change Biology Bioenergy. 2016, 8(5), 859-866

Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 beta-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions

Santos CA, Zanphorlin LM, Crucello A, Tonoli CCC, Ruller R, Horta MAC, Murakami MT, Souza AP
Biotechnology for Biofuels. 2016, 9, 71

Effect of Anthraquinone on Alkaline Pretreatment and Enzymatic Kinetics of Sugarcane Bagasse Saccharification: Laboratory and Pilot Scale Approach

Nascimento VM, Nakanishi SC, Rocha GJM, Rabelo SC, Pimenta MTB, Rossel CEV
ACS Sustainable Chemistry & Engineering. 2016, 4(7), 3609-3617

Enhanced cellulase production by Trichoderma harzianum by cultivation on glycerol followed by induction on cellulosic substrates

Delabona PS, Lima DJS, Robl D, Farinas CS, Rabelo SC, Pradella JGC
Journal of Industrial Microbiology & Biotechnology. 2016, 43(5), 617-626

Enhancing life cycle impact assessment from climate science: Review of recent findings and recommendations for application to LCA

Levasseur A, Cavalett O, Fuglestvedt J, Gasser T, Johansson DJA, Jorgensen SV, Raugei M, Reisinger A, Schivley G, Stromman AH, Tanaka K, Cherubini F
Ecological Indicators. 2016, 71, 163-174

Environmental and economic impacts of different sugarcane production systems in the ethanol biorefinery

Chagas MF, Bodonal RO, Cavalett O, Carvalho JLN, Bonomi AMFLJ, La Scala Jr. N
Biofuels Bioproducts & Biorefining-Biofpr. 2016, 10(1), 89-106

Ethanol-water organosolv delignification of liquid hot water (LHW) pretreated sugarcane bagasse enhanced by high-pressure carbon dioxide (HP-CO2)

Gurgel LVA, Pimenta MTB, Curvelo AAS
Industrial Crops and Products. 2016, 94, 942-950

Evaluation of the effects of chemical composition and refining treatments on the properties of nanofibrillated cellulose films from sugarcane bagasse

Santucci BS, Bras J, Belgacem N, Curvelo AAS, Pimenta MTB
Industrial Crops and Products. 2016, 91, 238-248

Expanding the Knowledge on Lignocellulolytic and Redox Enzymes of Worker and Soldier Castes from the Lower Termite Coptotermes gestroi

Cairo JPLF, Carazzolle MF, Leonardo FC, Mofatto LS, de Paiva LBB, Gonçalves TA, Uchima CA, Domingues RR, Alvarez TM, Tramontina, R, Vidal, RO, Costa, FF, Costa-Leonardo, AM, Paes Leme, AF, Pereira, GAG, Squina, FM
Frontiers in Microbiology. 2016, 7, 1518

Expression of Two Novel beta-Glucosidases from Chaetomium atrobrunneum in Trichoderma reesei and Characterization of the Heterologous Protein Products

Colabardini AC, Valkonen M, Huuskonen A, Siika-aho M, Koivula A, Goldman GH, Saloheimo M
Molecular Biotechnology. 2016, 58(12), 821-83

Feasibility Assessment of Converting Sugar Mills to Bioenergy Production in Africa

Leal MRLV, Leite JGDB, Chagas MF, Maia R, Cortez LAB
Agriculture-Basel. 2016, 6(3), 45

Frontiers in the Expansion of Bioproducts

Cota J, Venus J, Hoffmam ZB, Ribeiro LF
Biomed Research International. 2016, 2016, 3809386

GH53 Endo-Beta-1,4-Galactanase from a Newly Isolated Bacillus licheniformis CBMAI 1609 as an Enzymatic Cocktail Supplement for Biomass Saccharification

de Lima EA, Machado CB, Zanphorlin LM, Ward RJ, Sato HH, Ruller R
Applied Biochemistry and Biotechnology. 2016, 179(3), 415-426

Identification and characterization of putative xylose and cellobiose transporters in Aspergillus nidulans

dos Reis TF, de Lima PBA, Parachin NS, Mingossi FB, Oliveira JVC, Ries LNA, Goldman GH
Biotechnology for Biofuels. 2016, 9, 204

Insights into the plant polysaccharide degradation potential of the xylanolytic yeast Pseudozyma brasiliensis

Kaupert Neto AA, Borin GP, Goldman GH, Damásio ARL, Oliveira JVC
FEMS Yeast Research. 2016, 16(2), fov117

Life Cycle Assessment of Poly(Lactic Acid) (PLA): Comparison Between Chemical Recycling, Mechanical Recycling and Composting

de Andrade MFC, Souza PMS, Cavalett O, Morales AR
Journal of Polymers and the Environment. 2016, 24(4), 372-384

Lignin contributions to the nanoscale porosity of raw and treated lignocelluloses as observed by calorimetric thermoporometry

Driemeier CE, de Oliveira MM, Curvelo AAS
Industrial Crops and Products. 2016, 82, 114-117

Molecular basis of substrate recognition and specificity revealed in family 12 glycoside hydrolases

Squina FM, Calzado F, Prates ET, Gonçalves TA, Rubio MV, Zubieta MP, Skaf MS, Damásio ARL
Biotechnology and Bioengineering. 2016, 113(12), 2577-2586

Nitrogen Use Efficiency for Sugarcane-Biofuel Production: What Is Next?

Otto R, Castro SAQ, Mariano E, Castro SGQ, Franco HCJ, Trivelin PCO
BioEnergy Research. 2016, 9(4), 1272-1289

Overexpression of mitochondrial uncoupling protein 1 (UCP1) induces a hypoxic response in Nicotiana tabacum leaves

Barreto P, Okura V, Pena IA, Maia R, Maia IG, Arruda P
Journal of Experimental Botany. 2016, 67(1), 301-303

Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass

Schneider WDH, Gonçalves TA, Uchima CA, Couger MB, Prade R, Squina FM, Dillon AJP, Camassola M
Biotechnology for Biofuels. 2016, 9, 66

Physicochemical characterization of residue from the enzymatic hydrolysis of sugarcane bagasse in a cellulosic ethanol process at pilot scale

Menezes FF, Fernandes RHS, Rocha GJM, Maciel Filho R
Industrial Crops and Products. 2016, 94, 463-470

Review of the ISSCT Co-Products Workshop

Autrey LJC, Leal MRLV, Hassuani SJ
International Sugar Journal. 2016, 118(1405), 72-74

Single cell oil production integrated to a sugarcane-mill: Conceptual design, process specifications and economic analysis using molasses as raw material

Vieira JPF, Ienczak JL, Costa PS, Rossel CEV, Franco TT, Pradella JGC
Industrial Crops and Products. 2016, 89, 478-485

The functional properties of a xyloglucanase (GH12) of Aspergillus terreus expressed in Aspergillus nidulans may increase performance of biomass degradation

Viticosque GL, Ribeiro LFC, Lucas RC, Silva TM, Ribeiro LF, Damásio ARL, Farinas CS, Gonçalves AZL, Segato F, Buckeridge MS, Jorge JA, Polizeli MLTM
Applied Microbiology and Biotechnology. 2016, 100(21), 9133-9144

Thermophilic anaerobic digestion of raw sugarcane vinasse

Ferraz Jr. ADN, Koyama MH, Araújo Júnior MM, Zaiat M
Renewable Energy. 2016, 89, 245-252

Thermophilic biohydrogen production using a UASB reactor: performance during long-term operation

Braga AFM, Ferraz Jr. ADN, Zaiat M
Journal of Chemical Technology and Biotechnology. 2016, 91(4), 967-976

Thermostabilization of Bacillus subtilis GH11 xylanase by surface charge engineering

Alponti JS, Maldonado RF, Ward RJ
International Journal of Biological Macromolecules. 2016, 87, 522-528

TOR Signaling and Nutrient Sensing

Dobrenel T, Caldana C, Hanson J, Robaglia C, Vincentz M, Veit B, Meyer C
Annual Review of Plant Biology. 2016, 67, 261-285

Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Response to Sophorose Through RNA Sequencing Analysis

Antonieto ACC, de Paula RG, Castro LS, Silva-Rocha R, Persinoti GF, Silva RN
Current Genomics. 2016, 17(2), 119-131

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis

Castro LS, De Paula RG, Antonieto ACC, Persinoti GF, Silva-Rocha R, Silva RN
Frontiers in Microbiology. 2016, 7, 175

Use of Ascomycete Extracts in Enzymatic Cocktail Formulations Increases Sugar Cane Bagasse Hydrolysis

Robl D, Costa PS, Rabelo SC, Delabona PS, Lima DJS, Padilla G, Pradella JGC
BioEnergy Research. 2016, 9(2), 559-565

Using cell recycling batch fermentations to validate a setup for cellulosic ethanol production

Silva VFN, Nakanishi SC, Dionisio SR, Rossel CEV, Ienczak JL, Gonçalves AR, Rocha GJM
Journal of Chemical Technology and Biotechnology. 2016, 91(6), 1853-1859

Xylan-specific carbohydrate-binding module belonging to family 6 enhances the catalytic performance of a GH11 endo-xylanase

Hoffmam ZB, Zanphorlin LM, Cota J, Diogo JA, Almeida GB, Damásio ARL, Squina FM, Murakami MT, Ruller R
New Biotechnology. 2016, 33(4), 467-472

A computational environment to support research in sugarcane agriculture

Driemeier CE, Ling LY, Sanches GM, Pontes AO, Magalhães PSG, Ferreira JE
Computers and Electronics in Agriculture. 2016, 130, 13-19

Actions and opinions of Brazilian farmers who shift to sugarcane-an interview-based assessment with discussion of implications for land-use change

Egeskog A, Barretto A, Berndes G, Freitas F, Holmén M, Sparovek G, Torén J
Land Use Policy. 2016, 57, 594-604

Bio-based propylene production in a sugarcane biorefinery: A techno-economic evaluation for Brazilian conditions

Machado PG, Walter A, Cunha MP
Biofuels Bioproducts & Biorefining-Biofpr. 2016, 10, 623-633

Biochemical Characterization, Thermal Stability, and Partial Sequence of a Novel Exo-Polygalacturonase from the Thermophilic Fungus Rhizomucor pusillus A13.36 Obtained by Submerged Cultivation

Trindade LV, Desagiacomo C, Polizeli MLTM, Damásio ARL, Lima AMF, Gomes E, Bonilla-Rodrigues GO
Biomed Research International. 2016, 2016, 8653583

Bioethanol production by recycled Scheffersomyces stipitis in sequential batch fermentations with high cell density using xylose and glucose mixture

Santos SC, de Sousa AS, Dionisio SR, Tramontina R, Ruller R, Squina FM, Rossel CEV, Costa AC, Ienczak JL
Bioresource Technology. 2016, 219, 319-329

Bioprocess developments for cellulase production by Aspergillus Oryzae cultivated under solid-state fermentation

Pirota RDPB, Tonelotto M, Delabona PS, Fonseca RF, Paixão DAA, Baleeiro FCF, Bertucci Neto V, Farinas CS
Brazilian Journal of Chemical Engineering. 2016, 33(1), 21-31

Bridging the gap between impact assessment methods and climate science

Cherubini F, Fuglestvedt J, Gasser T, Cavalett O, Reisinger A, Huijbregts MAJ, Johansson DJA, Jorgensen SV, Raugei M, Schivley G, Stromman AH, Tanaka K, Levasseur A
Environmental Science & Policy. 2016, 64, 129-140

Direct N2O emission factors for synthetic N-fertilizer and organic residues applied on sugarcane for bioethanol production in Central-Southern Brazil

Siqueira Neto M, Galdos MV, Feigl BJ, Cerri CEP, Cerri CC
Global Change Biology Bioenergy. 2016, 8(2), 269-280

Editorial: Advances in Microalgae Biology and Sustainable Applications

Winck FV, Riaño-Pachón DM, Franco TT
Frontiers in Plant Science. 2016, 7, 1385

Effect of hemicellulolytic enzymes to improve sugarcane bagasse saccharification and xylooligosaccharides production

Goldbeck R, Gonçalves TA, Damásio ARL, de Paiva LBB, Wolf LD, Paixão DAA, Rocha GJM, Squina FM
Journal of Molecular Catalysis B-Enzymatic. 2016, 131, 36-46

Engineering increased thermostability in the GH-10 endo-1,4-beta-xylanase from Thermoascus aurantiacus CBMAI 756

Souza AR, Araujo GC, Zanphorlin LM, Ruller R, Franco FC, Torres FAG, Mertens JA, Bowman MJ, Gomes E, da Silva R
International Journal of Biological Macromolecules. 2016, 93, 20-26

Enhancement of Penicillium echinulatum glycoside hydrolase enzyme complex

Costa PS, Büchli F, Delabona PS, Robl D, Rabelo SC, Pradella JGC
Journal of Industrial Microbiology & Biotechnology. 2016, 43(5), 627-639

Eucalyptus Cell Wall Architecture: Clues for Lignocellulosic Biomass Deconstruction

Salazar MM, Grandis A, Pattathil S, Lepikson-Neto J, Camargo ELO, Alves A, Rodrigues JC, Squina FM, Cairo JPLF, Buckeridge MS, Hahn MG, Pereira GAG
BioEnergy Research. 2016, 9(3), 969-979

Evaluation of Brazilian Sugarcane Bagasse Characterization: An Interlaboratory Comparison Study

Sluiter JB, Chum HL, Gomes AC, Tavares RPA, Azevedo V, Pimenta MTB, Rabelo SC, Marabezi K, Curvelo AAS, Alves AR, Garcia WT, Carvalho W, Esteves PJ, Mendonça S, Oliveira PA, Ribeiro JAA, Mendes TD, Vicentin MP, Duarte CL, Mori, MN
Journal of AOAC International. 2016, 99(3), 579-585

Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification

Valadares F, Gonçalves TA, Gonçalves DSPO, Segato F, Romanel E, Milagres AMF, Squina FM, Ferraz A
Biotechnology for Biofuels. 2016, 9, 110

Fertigated Sugarcane Yield and Carbon Isotope Discrimination (Delta C-13) Related to Nitrogen Nutrition

Kölln OT, Gava GJC, Cantarella H, Franco HCJ, Uribe RAM, Pannuti LER, Trivelin PCO
Sugar Tech. 2016, 18(4), 391-400

Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis

Zhang Y, Nikolovski N, Sorieul M, Vellosillo T, McFarlane HE, Dupree R, Kesten C, Schneider R, Driemeier CE, Lathe R, Lampugnani E, Xiaolan Y, Ivakov A, Doblin MS, Mortimer J, Brown SP, Persson S, Dupree P
Nature Communications. 2016, 7, 11656

Hybrid Input-Output Life Cycle Assessment of First- and Second-Generation Ethanol Production Technologies in Brazil

Watanabe MDB, Chagas MF, Cavalett O, Guilhoto JJM, Griffin WM, Cunha MP, Bonomi AMFLJ
Journal of Industrial Ecology. 2016, 20(4), 764-774

Improving second generation bioethanol production in sugarcane biorefineries through energy integration

Oliveira CM, Cruz AJG, Costa CBB
Applied Thermal Engineering. 2016, 109, 819-827

Kinetics of thermophilic acidogenesis of typical Brazilian sugarcane vinasse

Koyama MH, Araújo Júnior MM, Zaiat M, Ferraz Jr. ADN
Energy. 2016, 116, 1097-1103

Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose

Rubio MV, Zubieta MP, Cairo JPLF, Calzado F, Paes Leme AF, Squina FM, Prade RA, Damásio ARL
Biotechnology for Biofuels. 2016, 9, 168

Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress

Jorge TF, Rodrigues JA, Caldana C, Schmidt R, Van Dongen JT, Thomas-Oates J, António C
MASS SPECTROMETRY REVIEWS. 2016, 35(5), 620-649

Non-productive adsorption of bacterial beta-glucosidases on lignins is electrostatically modulated and depends on the presence of fibronection type III-like domain

Silva VM, de Souza AS, Negrão DR, Polikarpov I, Squina FM, Oliveira Neto M, Muniz JRC, da Silva WJG
Enzyme and Microbial Technology. 2016, 87-88, 1-8

Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 beta-glucosidase from Exiguobacterium antarcticum B7

Zanphorlin LM, Giuseppe PO, Honorato RV, Tonoli CCC, Fattori J, Crespim E, de Oliveira PSL, Ruller R, Murakami MT
Scientific Reports. 2016, 6, 23776

Operational strategies for long-term biohydrogen production from sugarcane stillage in a continuous acidogenic packed-bed reactor

Fuess LT, Kiyuna LSM, Garcia ML, Zaiat M
International Journal of Hydrogen Energy. 2016, 41(19), 8132-8145

Poly(3-Hydroxybutyrate) Production by Cupriavidus Necator Supplemented with Miniemulsified Soybean Oil

Schmidt M, Ienczak JL, Quines LK, Zanfonato K, Schmidell W, Aragão GMF
Brazilian Journal of Chemical Engineering. 2016, 33(1), 13-20

Poly(3-Hydroxybutyrate) Production in Repeated fed-Batch with Cell Recycle Using a Medium with low Carbon Source Concentration

Quines LK, Ienczak JL, Schmidt M, Zanfonato K, Pradella JGC, Schmidell W, Aragão GMF
Applied Biochemistry and Biotechnology. 2016, 178(2), 408-417

Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) production in a system with external cell recycle and limited nitrogen feeding during the production phase

Schmidt M, Ienczak JL, Quines LK, Zanfonato K, Schmidell W, Aragão GMF
Biochemical Engineering Journal. 2016, 112, 130-135

Production of cellulose nanocrystals from sugarcane bagasse fibers and pith

Bras J, Oliveira FB, Pimenta MTB, Curvelo AAS, Belgacem N
Industrial Crops and Products. 2016, 93, 48-57

RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

Brown NA, Ries LNA, dos Reis TF, Rajendran R, dos Santos RAC, Ramage G, Riaño-Pachón DM, Goldman GH
Biotechnology for Biofuels. 2016, 9, 145

Root extracts of Bracchiaria humidicola and Saccharum spontaneum to increase N use by sugarcane

Kölln OT, Franco HCJ, Ferreira DA, Vargas VP, Castro SAQ, Cantarella H, Caldana C, Trivelin PCO
Scientia Agricola. 2016, 73(1), 34-42

Selection of reliable reference genes for RT-qPCR analysis during developmental stages and abiotic stress in Setaria viridis

Martins PK, Mafra V, Souza WR, Ribeiro AP, Vinecky F, Basso MF, da Cunha BADB, Kobayashi AK, Molinari HBC
Scientific Reports. 2016, 6, 28348

Solubility of lysozyme in aqueous solution containing ethanol or acetone: Unexpected dependence on the initial protein concentration

Pinheiro MJ, Azzoni SF, Miranda EA, Pessôa Filho PA
DYNAMIC SYSTEMS AND APPLICATIONS. 2016, 429, 9-13

Sugarcane land use and water resources assessment in the expansion area in Brazil

Scarpare FV, Hernandes TAD, Corrêa STR, Picoli MCA, Scanlon BR, Chagas MF, Duft DG, Cardoso TF
Journal of Cleaner Production. 2016, 133, 1318-1327

Sugarcane water footprint under different management practices in Brazil: Tiete/Jacare watershed assessment

Scarpare FV, Hernandes TAD, Corrêa STR, Kölln OT, Gava GJC, dos Santos LNS, Victoria RL
Journal of Cleaner Production. 2016, 112, 4576-4584

Sugarcane: a way out of energy poverty

Leite JGDB, Leal MRLV, Nogueira LAH, Cortez LAB, Dale BE, Maia RC, Adjorlolo C
Biofuels Bioproducts & Biorefining-Biofpr. 2016, 10(4), 393-408

Sustainable bioproducts in Brazil: disputes and agreements on a common ground agenda for agriculture and nature protection

Sparovek G, Antoniazzi LB, Barretto A, Barros AC, Benevides M, Berndes G, Braga EP, Calmon M, Marques FNA, Nogueira MP, Pinto LFG, Precioso V
Biofuels Bioproducts & Biorefining-Biofpr. 2016, 10(3), 204-221

The Aspergillus fumigatus SchA(SCH9) kinase modulates SakA(HOG1) MAP kinase activity and it is essential for virulence

Castro PA, dos Reis TF, Dolan SK, Manfiolli AO, Brown NA, Jones GW, Doyle S, Riaño-Pachón DM, Squina FM, Caldana C, Singh A, Del Poeta M, Hagiwara D, Silva-Rocha R, Goldman GH
Molecular Microbiology. 2016, 102(4), 642-671

Using temporal stability to estimate soya bean yield: a case study in Parana state, Brazil

Figueiredo GKDA, Brunsell NA, Rocha JV, Lamparelli RAC, Picoli MCA
International Journal of Remote Sensing. 2016, 37(5), 1223-1242

Conformational changes in a hyperthermostable glycoside hydrolase: enzymatic activity is a consequence of the loop dynamics and protonation balance

Oliveira LC, Silva VM, Colussi F, Cabral AD, Oliveira Neto M, Squina FM, da Silva WJG
PloS One. 2015, 10(2), e0118225

Contribution of fertilizer nitrogen to the total nitrogen extracted by sugarcane under Brazilian field conditions

Vieira- Megda MX, Mariano E, Leite JM, Franco HCJ, Vitti AC, Megda M, Khan SA, Mulvaney RL, Trivellin PCO
Nutrient Cycling in Agroecosystems. 2015, 101(2), 241-257

Conversion of levulinic acid into gamma-valerolactone using Fe-3(CO)(12): mimicking a biorefinery setting by exploiting crude liquors from biomass acid hydrolysis

Metzker G, Burtoloso ACB
Chemical Communications. 2015, 51(75), 14199-14202

Development of a chimeric hemicellulase to enhance the xylose production and thermotolerance

Diogo JA, Hoffmam ZB, Zanphorlin LM, Cota J, Machado CB, Wolf LD, Squina FM, Damásio ARL, Murakami MT, Ruller R
Enzyme and Microbial Technology. 2015, 69, 31-37

Economic and environmental assessment of n-butanol production in an integrated first and second generation sugarcane biorefinery: Fermentative versus catalytic routes

Pereira LG, Dias MOS, Mariano AP, Maciel Filho R, Bonomi AMFLJ
Applied Energy. 2015, 160, 120-131

Effects of Governance on Availability of Land for Agriculture and Conservation in Brazil

Sparovek G, Barretto AGDP, Matsumoto M, Berndes G
Environmental Science & Technology. 2015, 49(17), 10285-10293

Effects of the pretreatment method on high solids enzymatic hydrolysis and ethanol fermentation of the cellulosic fraction of sugarcane bagasse

Martins LHS, Rabelo SC, Costa AC
Bioresource Technology. 2015, 191, 312-321

Enhanced xyloglucan-specific endo-beta-1,4-glucanase efficiency in an engineered CBM44-XegA chimera

Furtado GP, dos Santos CR, Cordeiro RL, Ribeiro LF, Moraes LAB, Damásio ARL, Polizeli MLTM, Lourenzoni MR, Murakami MT, Ward RJ
Applied Microbiology and Biotechnology. 2015, 99(12), 5095-5107

Enhancing of sugar cane bagasse hydrolysis by Annulohypoxylon stygium glycohydrolases

Robl D, Costa PS, Büchli F, Lima DJS, Delabona PS, Squina FM, Pimentel IC, Padilla G, Pradella JGC
Bioresource Technology. 2015, 177, 247-254

Environmental implications of anaerobic digestion for manure management in dairy farms in Mexico: a life cycle perspective

Rivas-Garcia P, Botello-Alvarez JE, Seabra JEA, Walter ACS, Estrada-Baltazar A
Environmental Technology. 2015, 36(17), 2198-2209

ETHANOL PRECIPITATION OF GLYCOSYL HYDROLASES PRODUCED BY Trichoderma harzianum P49P11

Mariño MA, Azzoni SF, Miranda EA
Brazilian Journal of Chemical Engineering. 2015, 32(2), 325-333

Extraction of Poly(3-hydroxybutyrate), produced by Cupriavidus Necator, with propylene carbonate

Quines LK, Ienczak JL, Schmidt M, Zanfonato K, Rodrigues MI, Schmidell W, Aragão GMF
Química Nova. 2015, 38(2), 214-220

G-protein coupled receptor-mediated nutrient sensing and developmental control in Aspergillus nidulans

Brown NA, dos Reis TF, Ries LNA, Caldana C, Mah JH, Yu JH, Macdonald JM, Goldman GH
Molecular Microbiology. 2015, 98(3), 420-439

Greenhouse gas emissions from sugarcane vinasse transportation by open channel: a case study in Brazil

Oliveira BG, Carvalho JLN, Cerri CEP, Cerri CC, Feigl BJ
Journal of Cleaner Production. 2015, 94, 102-107

High organic loading rate on thermophilic hydrogen production and metagenomic study at an anaerobic packed-bed reactor treating a residual liquid stream of a Brazilian biorefinery

Ferraz Jr. ADN, Etchebehere C, Zaiat M
Bioresource Technology. 2015, 186, 81-88

Hydrated fractions of cellulosics probed by infrared spectroscopy coupled with dynamics of deuterium exchange

Driemeier CE, Mendes FM, Ling LY
Carbohydrate Polymers. 2015, 127, 152-159

Improvement on sugar cane bagasse hydrolysis using enzymatic mixture designed cocktail

Bussamra BC, Azzoni SF, Costa AC
Bioresource Technology. 2015, 187, 173-181

Increased biomass saccharification by supplementation of a commercial enzyme cocktail with endo-arabinanase from Bacillus licheniformis

Machado CB, Citadini AP, Goldbeck R, Beniz DB, Figueiredo FL, da Silva TM, Hoffmam ZB, de Sousa AS, Squina FM, Polizeli MLTM, Ruller R, Ward RJ
Biotechnology Letters. 2015, 37(7), 1455-1462

Influence of mixed sugarcane bagasse samples evaluated by elemental and physical-chemical composition

Rocha GJM, Nascimento VM, Gonçalves AR, Silva VFN, Martín C
Industrial Crops and Products. 2015, 64, 52-58

Insertion of a xylanase in xylose binding protein results in a xylose-stimulated xylanase

Ribeiro LF, Nicholes N, Tullman J, Fuzo CA, Ribeiro LFC, Vieira DS, Furtado GP, Ostermeier M, Ward RJ
Biotechnology for Biofuels. 2015, 8, 118

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles

Winck FV, Ribeiro ACP, Domingues RR, Ling LY, Riaño-Pachón DM, Brandão TB, Gouvea AF, Santos-Silva AR, Coletta RD, Paes Leme AF, Rivera C
Scientific Reports. 2015, 5, 16305-16317

Life cycle assessment of butanol production in sugarcane biorefineries in Brazil

Pereira LG, Chagas MF, Dias MOS, Cavalett O, Bonomi AMFLJ
Journal of Cleaner Production. 2015, 96, 557-568

Low liquid-solid ratio fractionation of sugarcane bagasse by hot water autohydrolysis and organosolv delignification

Vallejos ME, Zambon MD, Area MC, Curvelo AAS
Industrial Crops and Products. 2015, 65, 349-353

Mathematical modeling of enzyme production using Trichoderma harzianum P49P11 and sugarcane bagasse as carbon source

Gelain L, Pradella JGC, Costa AC
Bioresource Technology. 2015, 198, 101-107

Mesophilic hydrogen production in acidogenic packed-bed reactors (APBR) using raw sugarcane vinasse as substrate: Influence of support materials

Ferraz Jr. ADN, Etchebehere C, Zaiat M
Anaerobe. 2015, 34, 94-105

On and Under the Skin: Emerging Basidiomycetous Yeast Infections Caused by Trichosporon Species

Marine M, Brown NA, Riaño-Pachón DM, Goldman GH
PLoS Pathogens. 2015, 11(7), e1004982

Outlook for ethanol production costs in Brazil up to 2030, for different biomass crops and industrial technologies

Jonker JGG, Van der Hilst F, Junginger HM, Cavalett O, Chagas MF, Faaj APC
Applied Energy. 2015, 147, 593-610

Physical and chemical studies of tungsten carbide catalysts: effects of Ni promotion and sulphonated carbon

Rodella CB, Barrett DH, Moya SF, Figueroa SJA, Pimenta MTB, Curvelo AAS, Silva VT
RSC Advances. 2015, 5(30), 23874-23885

Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Mattiello L, Riaño-Pachón DM, Cruz LP, Mattos Martins MC, Bassi D, Marchiori PER, Ribeiro RV, Labate MTV, Labate CA, Menossi M
BMC Plant Biology. 2015, 15, 300

The Aspergillus fumigatus sitA Phosphatase Homologue Is Important for Adhesion, Cell Wall Integrity, Biofilm Formation, and Virulence

Bom VLP, Castro PA, Winkelströter LK, Marine M, Hori JI, Ramalho LNZ, dos Reis TF, Goldman MHS, Brown NA, Rajendran R, Ramage G, Walker LA, Munro CA, Rocha MC, Malavazi I, Hagiwara D, Goldman GH
Eukaryotic Cell. 2015, 14(8), 728-744

Xylanase production by endophytic Aspergillus niger using pentose-rich hydrothermal liquor from sugarcane bagasse

Robl D, Delabona PS, Costa PS, Lima DJS, Rabelo SC, Pimentel IC, Büchli F, Squina FM, Padilla G, Pradella JGC
Biocatalysis and Biotransformation. 2015, 33(3), 175-187

A Novel Member of GH16 Family Derived from Sugarcane Soil Metagenome

Alvarez TM, Liberato MV, Cairo JPLF, Paixão DAA, Campos BM, Ferreira MR, Almeida RF, Pereira IO, Bernardes A, Matsu GCG, Chinaglia M, Polikarpov I, Oliveira Neto M, Squina FM
Applied Biochemistry and Biotechnology. 2015, 177(2), 304-317

A vertical integration simplified model for straw recovery as feedstock in sugarcane biorefineries

Cardoso TF, Chagas MF, Rivera EC, Cavalett O, Morais ER, Geraldo VC, Braunbeck OA, Cunha MP, Cortez LAB, Bonomi AMFLJ
Biomass & Bioenergy. 2015, 81, 216-223

Biogas production within the bioethanol production chain: Use of co-substrates for anaerobic digestion of sugar beet vinasse

Moraes BS, Triolo JM, Lecona VP, Zaiat M, Sommer SM
Bioresource Technology. 2015, 190, 227-234

Biogeochemical Research Priorities for Sustainable Biofuel and Bioenergy Feedstock Production in the Americas

Gollany HT, Titus BD, Scott DA, Asbjorsen H, Resh SC, Chimner RA, Kaczmarek DJ, Leite LFC, Ferreira ACC, Rod KA, Hilbert J, Galdos MV, Cisz ME
Environmental Management. 2015, 56(6), 1330-1355

High osmolarity glycerol response PtcB phosphatase is important for Aspergillus fumigatus virulence

Winkelströter LK, Bom VLP, Castro PA, Ramalho LNZ, Brown NA, Goldman MHS, Rajendran R, Ramage G, Bovier E, dos Reis TF, Savoldi M, Hagiwara D, Goldman GH
Molecular Microbiology. 2015, 69(1), 42-54

Interaction between N-fertilizer and water availability on borer-rot complex in sugarcane

Pannuti LER, Baldin ELL, Gava GJC, Silva JPGF, Souza ES, Kölln OT
Bragantia. 2015, 74(1), 75-83

Investigation of uncertainties associated with the production of n-butanol through ethanol catalysis in sugarcane biorefineries

Pereira LG, Dias MOS, MacLean HL, Bonomi AMFLJ
Bioresource Technology. 2015, 190, 242-250

Life cycle assessment of biofuels from an integrated Brazilian algae-sugarcane biorefinery

Souza SP, Seabra JEA, Gopal AR
Energy. 2015, 81, 373-381

Microemulsification-based method: analysis of ethanol in fermentation broth of sugar cane

Giordano GF, Shiroma LY, Gobbi AL, Kubota LT, Lima RS
Analytical Methods. 2015, 7(23), 10061-10066

Multiple phosphatases regulate carbon source-dependent germination and primary metabolism in Aspergillus nidulans

Assis LJ, Ries LNA, Savoldi M, Dinamarco TM, Goldman GH, Brown NA
G3-Genes Genomes Genetics. 2015, 5(5), 857-872

Oligomeric state and structural stability of two hyperthermophilic beta-glucosidases from Thermotoga petrophila

Colussi F, Silva VM, Miller I, Cota J, Oliveira LC, Oliveira Neto M, Squina FM, da Silva WJG
Amino Acids. 2015, 47(5), 937-948

Performance of herbicides in sugarcane straw

Araldi R, Velini ED, Gomes GLG, Tropaldi L, Silva IPF, Carbonari CA
Ciencia Rural. 2015, 45(12), 2106-2112

Pilot scale steam explosion and diluted sulfuric acid pretreatments: Comparative study aiming the sugarcane bagasse saccharification

Rocha GJM, Gonçalves AR, Nakanishi SC, Nascimento VM, Silva VFN
Industrial Crops and Products. 2015, 74, 810-816

Recombinant Trichoderma harzianum endoglucanase I (Cel7B) is a highly acidic and promiscuous carbohydrate-active enzyme

Pellegrini VOA, Serpa VI, Godoy AS, Camilo CM, Bernardes A, Pereira Jr. N, Cairo JPLF, Squina FM, Polikarpov I, de Rezende CA
Applied Microbiology and Biotechnology. 2015, 99(22), 9591-9604

Residual recovery and yield performance of nitrogen fertilizer applied at sugarcane planting

Franco HCJ, Otto R, Vitti AC, Faroni CE, Oliveira ECA, Fortes C, Ferreira DA, Kölln OT, Garside AL, Trivelin PCO
Scientia Agricola. 2015, 72(6), 528-534

Spatial and temporal contrasts in the distribution of crops and pastures across Amazonia: A new agricultural land use data set from census data since 1950

Imbach P, Manrow M, Barona E, Barretto A, Hyman G, Ciais P
Global Biogeochemical Cycles. 2015, 29(6), 898-916

Subcritical Water: A Method for Green Production of Cellulose Nanocrystals

Novo LP, Bras J, Garcia A, Belgacem N, Curvelo AAS
ACS Sustainable Chemistry & Engineering. 2015, 3(11), 2839-2846

Sugarcane processing for ethanol and sugar in Brazil

Dias MOS, Maciel Filho R, Mantelatto PE, Cavalett O, Rossel CEV, Bonomi AMFLJ, Leal MRLV
Environmental Development. 2015, 15, 35-51

Systematic Global Analysis of Genes Encoding Protein Phosphatases in Aspergillus fumigatus

Winkelströter LK, Dolan SK, dos Reis TF, Bom VLP, de Castro PA, Hagiwara D, Alowni R, Jones GW, Doyle S, Brown NA, Goldman GH
G3: Genes| Genomes| Genetics. 2015, 5(7), 1525-1539

Technology for sugarcane agroindustry waste reuse as granulated organomineral fertilizer

Gurgel MNA, Corrêa STR, Dourado Neto D, Paula Jr. DR
Engenharia Agrícola. 2015, 35(1), 63-75

The Aspergillus fumigatus pkcA(G579R) Mutant Is Defective in the Activation of the Cell Wall Integrity Pathway but Is Dispensable for Virulence in a Neutropenic Mouse Infection Model

Bom VLP, Castro PA, Winkelströter LK, Marine M, Hori CE, Ramalho LNZ, dos Reis TF, Goldman MHS, Brown NA, Rajendran R, Ramage G, Walker LA, Munro CA, Rocha MC, Malavazi I, Hagiwara D, Goldman GH
PloS One. 2015, 10(8), e0135195

The development of animal infection models and antifungal efficacy assays against clinical isolates of Trichosporon asahii, T. asteroides and T. inkin

Marine M, Bom VLP, Castro PA, Winkelströter LK, Ramalho LNZ, Brown NA, Goldman GH
Virulence. 2015, 6(5), 476-486

The impact of chromatin remodelling on cellulase expression in Trichoderma reesei

Mello-de Sousa TM, Rassinger A, Pucher ME, Persinoti GF, Silva-Rocha R, Poças-Fonseca MJ, Mach RL, Silva RN, Mach-Aigner AR, Castro LS
BMC Genomics. 2015, 16, 588-599

The use of socioeconomic indicators to assess the impacts of sugarcane production in Brazil

Machado PG, Picoli MCA, Torres LJ, Oliveira JG, Walter A
Renewable & Sustainable Energy Reviews. 2015, 52, 1519-1526

A thermogravimetric analysis (TGA) method to determine the catalytic conversion of cellulose from carbon-supported hydrogenolysis process

Leal GF, Ramos LA, Barrett DH, Curvelo AAS, Rodella CB
Thermochimica Acta. 2015, 616, 9-13

Anaerobic digestion of vinasse from sugarcane ethanol production in Brazil: Challenges and perspectives

Moraes BS, Zaiat M, Bonomi AMFLJ
Renewable & Sustainable Energy Reviews. 2015, 44, 888-903

Autohydrolysis of Hemicelluloses from Sugarcane Bagasse During Hydrothermal Pretreatment: a Kinetic Assessment

Santucci BS, Maziero P, Rabelo SC, Curvelo AAS, Pimenta MTB
BioEnergy Research. 2015, 8(4), 1778-1787

Changes in Nanoscale Porosity by Wet Pressing Pulps from Sugarcane Bagasse

de Oliveira MM, Driemeier CE, Curvelo AAS
BioResources. 2015, 10(4), 8518-8527

Characterization of fungi isolated from the Amazon region for the potential of biomass-degrading enzymes production

Pirota RDPB, Tonelotto M, Delabona PS, Tremacoldi CR, Farinas CS
Ciência Rural. 2015, 45(9), 1606-1612

Comparative analysis of three hyperthermophilic GH1 and GH3 family members with industrial potential

Cota J, Corrêa TLR, Damásio ARL, Diogo JA, Hoffmam ZB, Silva WJG, Oliveira LC, Prade RA, Squina FM
New Biotechnology. 2015, 32(1), 13-20

Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass

Borin GP, Sanchez CC, Souza AP, Santana ES, Paes Leme AF, de Souza AT, Squina FM, Buckeridge MS, Goldman GH, Oliveira JVC
PloS One. 2015, 10(6), e0129275

A feature selection technique for inference of graphs from their known topological properties: Revealing scale-free gene regulatory networks

Lopes FM, Martins Jr. DC, Barrera J, Cesar Jr. RM
Information Sciences. 2014, 272, 1-15

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana

Omidbakhshfard MA, Winck FV, Arvidsson S, Riaño-Pachón DM, Mueller-Roeber B
Journal of Integrative Plant Biology. 2014, 56(6), 527-538

Adsorption characteristics of cellulase and β‐glucosidase on Avicel, pretreated sugarcane bagasse, and lignin

Machado DL, Moreira Neto J, Pradella JGC, Bonomi AMFLJ, Rabelo SC, Costa AC
Biotechnology and Applied Biochemistry. 2014, 62(5), 681-689

Alpha-(1,4)-Amylase, but not alpha- and beta-(1,3)-glucanases, may be responsible for the impaired growth and morphogenesis of Paracoccidioides brasiliensis induced by N-glycosylation inhibition

Almeida FBR, Pigosso LL, Damásio ARL, Monteiro VN, Soares CMA, Silva RN, Roque-Barreira MC
Yeast. 2014, 31, 1-11

An assessment of the potential for sugarcane bagasse and trash pellets market

Walter A, Leal MRLV, Seabra JEA, Pereira TP
International Sugar Journal. 2014, 126(1381), 30-34

Anaerobic digestion of vinasse from sugarcane biorefineries in Brazil from energy, environmental, and economic perspectives: profit or expense?

Moraes BS, Junqueira TL, Pavanello LG, Cavalett O, Mantelatto PE, Bonomi AMFLJ, Zaiat M
Applied Energy. 2014, 113, 825-835

Atmospheric pressure plasma pretreatment of sugarcane bagasse: the influence of biomass particle size in the ozonation process

Souza-Correa JA, Oliveira C, Nascimento VM, Wolf LD, Gómez EO, Rocha GJM, Amorim J
Applied Biochemistry and Biotechnology. 2014, 172(3), 1663-1672

Butanol production in a sugarcane biorefinery using ethanol as feedstock. Part I: Integration to a first generation sugarcane distillery

Dias MOS, Pereira LG, Junqueira TL, Pavanello LG, Chagas MF, Cavalett O, Maciel Filho R, Bonomi AMFLJ
Chemical Engineering Research & Design. 2014, 92(8), 1441-1451

Characterization of sugarcane bagasse by autofluorescence microscopy

Chimenez TA, Gehlen MH, Marabezi K, Curvelo AAS
Cellulose. 2014, 21(1), 653-664

Combined process system for the production of bioethanol from sugarcane straw

Oliveira LRM, Nascimento VM, Gonçalves AR, Rocha GJM
Industrial Crops and Products. 2014, 58, 1-7

Communication: transient anion states of phenol center dot center dot center dot(H2O)(n) (n=1, 2) complexes: Search for microsolvation signatures

Oliveira EM, Freitas TC, Coutinho K, Varella MTN, Canuto S, Lima MAP, Bettega MHF
Journal of Chemical Physics. 2014, 141(5), 051105

Concommitant adaptation of a GH11 xylanase by directed evolution to create an alkali-tolerant/thermophilic enzyme

Ruller R, Alponti JS, Deliberto LA, Zanphorlin LM, Machado CB, Ward RJ
Protein Engineering Design & Selection. 2014, 27(8), 255-262

Contributing to the environmental sustainability of the second generation ethanol production: Delignification of sugarcane bagasse with sodium hydroxide recycling

Rocha GJM, Nascimento VM, Silva VFN, Corso DLS, Gonçalves AR
Industrial Crops and Products. 2014, 59, 63-68

Crop-pasture rotation: a strategy to reduce soil greenhouse gas emissions in the brazilian cerrado

Carvalho JLN, Raucci GS, Frazão LA, Cerri CEP, Bernoux M, Cerri CC
Agriculture Ecosystems & Environment. 2014, 183, 167-175

Effect of organic loading rate on hydrogen production from sugarcane vinasse in thermophilic acidogenic packed bed reactors

Ferraz Jr. ADN, Wenzel J, Etchebehere C, Zaiat M
International Journal of Hydrogen Energy. 2014, 39(30), 16852-16862

Elastic scattering of slow electrons by n-pentanol alcohol

Oliveira EM, Varella MTN, Bettega MHF, Lima MAP
European Physical Journal D. 2014, 68(3), 65

Enzymatic Bioremediation of Effluent from Sugarcane Bagasse Soda Delignification Process

Rocha GJM, Nascimento VM, Silva VFN
Waste and Biomass Valorization. 2014, 5(6), 919-929

Experimental study of unconfined surface wave discharges at atmospheric pressure by optical emission spectroscopy

Ridenti MA, Souza- Correa JA, Amorim J
Journal of Physics D-Applied Physics. 2014, 47(4), 045204

Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E-urophylla x E-grandis

Lepikson-Neto J, do Nascimento LC, Salazar MM, Camargo ELO, Cairo JPLF, Teixeira PJ, Marques WL, Squina FM, Mieczkowski P, Deckmann AC, Pereira GAG
BMC Plant Biology. 2014, 14, 301-318

Functional characterization of a xylose transporter in Aspergillus nidulans

Colabardini AC, Ries LNA, Brown NA, dos Reis TF, Savoldi M, Goldman MHS, Menino JF, Rodrigues F, Goldman GH
Biotechnology for Biofuels. 2014, 7(46), 1-19

Harvest managements and cultural practices in sugarcane

Castro SGQ, Franco HCJ, Mutton MA
Revista Brasileira de Ciência do Solo . 2014, 38(1), 299-306

How nutritional status signalling coordinates metabolism and lignocellulolytic enzyme secretion

Brown NA, Ries LNA, Goldman GH
Fungal Genetics and Biology. 2014, 72, 48-63

Identification of Transcription Factor Genes and Their Correlation with the High Diversity of Stramenopiles

Buitrago- Flóres FJ, Restrepo S, Riaño-Pachón DM
PloS One. 2014, 9(11), e111841

Integrated production of sugarcane ethanol and soybean biodiesel: Environmental and economic implications of fossil diesel displacement

Souza SP, Seabra JEA
Energy Conversion and Management. 2014, 87, 1170-1179

Liming and potassium fertilization for Tifton 85 grass

Coutinho ELM, Franco HCJ, Orioli Junior V, Pasquetto JVG, Pereira LS
Bioscience Journal . 2014, 30(3), 101-111

Modeling potential freshwater ecotoxicity impacts due to pesticide use in biofuel feedstock production: the cases of maize, rapeseed, salix, soybean, sugar cane, and wheat

Nordborg M, Cederberg C, Berndes G
Environmental Science & Technology. 2014, 48(19), 11379-11388

Modular hyperthermostable bacterial endo-beta-1, 4-mannanase: molecular shape, flexibility and temperature-dependent conformational changes

Silva VM, Colussi F, Oliveira Neto M, Braz ASK, Squina FM, Oliveira CLP, da Silva WJG
PloS One. 2014, 9(3), e92996

Payback time for soil carbon and sugar-cane ethanol

Mello FFC, Cerri CEP, Davies CA, Holbrook NM, Paustian K, Maia SMF, Galdos MV, Bernoux M, Cerri CC
Nature Climate Change. 2014, 4(7), 605-609

Simplification of the biomass to ethanol conversion process by using the whole medium of filamentous fungi cultivated under solid-state fermentation

Pirota RDPB, Delabona PS, Farinas CS
BioEnergy Research. 2014, 7(2), 744-752

Simultaneous production of xylooligosaccharides and antioxidant compounds from sugarcane bagasse via enzymatic hydrolysis

Mandelli F, de Paiva LBB, Almeida RF, Goldbeck R, Wolf LD, Hoffmam ZB, Ruller R, Rocha GJM, Mercadanrte AZ, Squina FM
Industrial Crops and Products. 2014, 52, 770-775

Sustainable energy crop production

Del Grosso S, Smith P, Galdos MV, Hastings A, Parton W
Current Opinion in Environmental Sustainability. 2014, 9-10, 20-25

Synergistic action of co-expressed xylanase/laccase mixtures against milled sugar cane bagasse

Maldonado RF, Ribeiro LF, Furtado GP, Arruda LM, Meleiro LP, Alponti JS, Botelho- Machado C, Vieira DS, Bonneil E, Furriel RPM, Thibault P, Ward RJ
Process Biochemistry. 2014, 49(7), 1152-1161

The acetyl bromide method is faster, simpler and presents best recovery of lignin in different herbaceous tissues than klason and thioglycolic acid methods

Moreira-Vilar FC, Siqueira-Soares RC, Finger-Teixeira A, Oliveira DM, Ferro AP, Rocha GJM, Ferrarese MLL, dos Santos WD, Ferrarese-Filho O
PloS One. 2014, 9(10), e110000

The Aspergillus nidulans ATM kinase regulates mitochondrial function, glucose uptake and the carbon starvation response

Krohn NG, Brown NA, Colabardini AC, dos Reis TF, Savoldi M, Dinamarco TM, Goldman MHS, Goldman GH
G3-Genes Genomes Genetics. 2014, 4(1), 49-62

The Aspergillus nidulans signalling mucin MsbA regulates starvation responses, adhesion and affects cellulase secretion in response to environmental cues

Brown NA, dos Reis TF, Goinski AB, Savoldi M, Menino J, Almeida MT, Goldman GH, Rodrigues F
Molecular Microbiology. 2014, 94(5), 1103-1120

The crucial role of molecular ions in the radial contraction of argon microwave-sustained plasma jets at atmospheric pressure

Amorim J, Ridenti MA, Spyrou N
Chemical Physics Letters. 2014, 595, 83-86

The involvement of the Mid1/Cch1/Yvc1 calcium channels in Aspergillus fumigatus virulence

Castro PA, Chiaratto J, Winkelströter LK, Bom VLP, Ramalho LNZ, Goldman MHS, Brown NA, Goldman GH
PloS One. 2014, 9(8), e103957

The sugarcane defense protein SUGARWIN2 causes cell death in Colletotrichum falcatum but not in non-pathogenic fungi

Franco FP, Santiago AC, Henrique-Silva F, Castro PA, Goldman GH, Moura DS, Silva-Filho MC
PloS One. 2014, 9(3), e91159

The use of ALOS/PALSAR data for estimating sugarcane productivity

Picoli MCA, Lamparelli RAC, Sano EE, Rocha JV
Engenharia Agrícola. 2014, 34(6), 1245-1255

Transcriptome analysis highlights changes in the leaves of maize plants cultivated in acidic soil containing toxic levels of Al3+

Mattiello L, Begcy K, Silva FR, Jorge RA, Menossi M
Molecular Biology Reports. 2014, 41(12), 8107-8116

Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse

Horta MAC, Vicentini R, Laborda P, Crucello A, Azzoni SF, Kuroshu RM, Polikarpov I, Pradella JGC, Souza AP
PloS One. 2014, 9(2), e88689

Two-dimensional Rietveld analysis of celluloses from higher plants

Driemeier CE
Cellulose. 2014, 21(2), 1065-1073

Understanding the function of conserved variations in the catalytic loops of fungal glycoside hydrolase family 12

Damásio ARL, Rubio MV, Oliveira LC, Segato F, Dias BA, Citadini AP, Paixão DAA, Squina FM
Biotechnology and Bioengineering. 2014, 111(8), 1494-1505

Water footprint of biofuels in Brazil: assessing regional differences

Hernandes TAD, Bufon VB, Seabra JEA
Biofuels Bioproducts & Biorefining. 2014, 8(2), 241-252

X-ray diffraction from faulted cellulose I constructed with mixed I alpha-I beta stacking

Driemeier CE, Francisco LH
Cellulose. 2014, 21(5), 3161-3169

Yield potential of sugarcane under drip irrigation in function of varieties and crop cycles

Silva MA, Arantes MT, Rhein AFL, Gava GJC, Kölln OT
Revista Brasileira de Engenharia Agrícola e Ambiental. 2014, 18(3), 241-249

A novel thermostable xylanase GH10 from Malbranchea pulchella expressed in Aspergillus nidulans with potential applications in biotechnology

Ribeiro LFC, de Lucas RC, Viticosque GL, Ribeiro LF, Ward RJ, Rubio MV, Damásio ARL, Squina FM, Gregory RC, Walton PH, Jorge JA, Prade RA, Buckeridge MS, Polizeli MLTM
Biotechnology for Biofuels. 2014, 7, 115

Addition of feruloyl esterase and xylanase produced on-site improves sugarcane bagasse hydrolysis

Braga CMP, Delabona PS, Lima DJS, Paixão DAA, Pradella JGC, Farinas CS
Bioresource Technology. 2014, 170, 316-324

Biochemical characterization of an endoxylanase from Pseudozyma brasiliensis sp nov strain GHG001 isolated from the intestinal tract of Chrysomelidae larvae associated to sugarcane roots

Borges TA, de Souza AT, Squina FM, Riaño-Pachón DM, dos Santos RAC, Machado E, Damásio ARL, Goldman GH
Process Biochemistry. 2014, 49(1), 77-83

Butanol production in a sugarcane biorefinery using ethanol as feedstock. Part II: Integration to a second generation sugarcane distillery

Pereira LG, Dias MOS, Junqueira TL, Pavanello LG, Chagas MF, Cavalett O, Maciel Filho R, Bonomi AMFLJ
Chemical Engineering Research & Design. 2014, 92(8), 1452-1462

ChIP-seq reveals a role for CrzA in the Aspergillus fumigatus high-osmolarity glycerol response (HOG) signalling pathway

Castro PA, Almeida RSC, Freitas FZ, Bertolini MC, Morais ER, Brown NA, Ramalho LNZ, Hagiwara D, Mitchell TK, Goldman GH
Molecular Microbiology. 2014, 94(3), 655-674

Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis

Antonieto ACC, Castro LS, Silva-Rocha R, Persinoti GF, Silva RN
Fungal Genetics and Biology. 2014, 73, 93-103

Development of hemicellulolytic enzyme mixtures for plant biomass deconstruction on target biotechnological applications

Goldbeck R, Damásio ARL, Gonçalves TA, Machado CB, Paixão DAA, Wolf LD, Mandelli F, Rocha GJM, Ruller R, Squina FM
Applied Microbiology and Biotechnology. 2014, 98, 8513-8525

Enabling large-scale next-generation sequence assembly with Blacklight

Couger MB, Pipes L, Squina FM, Prade R, Siepel A, Palermo R, Katze MG, Mason CE, Blood PD
Concurrency and Computation-Practice & Experience. 2014, 26(13), 2157-2166

Enhancement of the robustness on dynamic speckle laser numerical analysis

Cardoso RR, Braga RA
Optics and Lasers in Engineering. 2014, 63, 19-24

Enhancing liquid hot water (LHW) pretreatment of sugarcane bagasse by high pressure carbon dioxide (HP-CO2)

Gurgel LVA, Pimenta MTB, Curvelo AAS
Industrial Crops and Products. 2014, 57, 141-149

Evaluating the composition and processing potential of novel sources of brazilian biomass for sustainable biorenewables production

Gomez LD, McQueen-Mason SJ, Steele-King CG, Lima MA, Simister R, Bernardinelli OD, Carvalho MA, de Rezende CA, Labate CA, Azevedo ER, Polikarpov I
Biotechnology for Biofuels. 2014, 7, 10

Genomics review of holocellulose deconstruction by Aspergilli

Segato F, Damásio ARL, de Lucas RC, Squina FM, Prade RA
Microbiology and Molecular Biology Reviews. 2014, 78(4), 588-613

Hydrolysis of sugarcane bagasse in subcritical water

Prado JM, Follegatti-Romero LA, Forster-Carneiro T, Rostagno MA, Maugeri Filho F, Meireles MAA
Journal of Supercritical Fluids. 2014, 86, 15-22

Long-term prospects for the environmental profile of advanced sugar cane ethanol

da Silva CRU, Franco HCJ, Junqueira TL, Van Oers L, Vanr der Voet E, Seabra JEA
Environmental Science & Technology. 2014, 48(20), 12394-12402

Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases

dos Santos CR, Polo CC, Costa MCMF, Nascimento AFZ, Meza AN, Cota J, Hoffmam ZB, Honorato RV, de Oliveira PSL, Goldman GH, Gilbert HJ, Prade RA, Ruller R, Squina FM, Wong DWS, Murakami MT
Journal of Biological Chemistry. 2014, 289(11), 7362-7373

Microbial lipid production: screening with yeasts grown on Brazilian molasses

Vieira JPF, Ienczak JL, Rossel CEV, Pradella JGC, Franco TT
Biotechnology Letters. 2014, 36(12), 2433-2442

ProbMetab: an R package for bayesian probabilistic annotation of LC-MS-based metabolomics

Silva RR, Jourdan F, Salvanha DM, Letisse F, Jamim EL, Guidetti-Gonzalez S, Labate CA, Vencio RZN
Bioinformatics. 2014, 30(9), 1336-1337

Protein kinase C overexpression suppresses calcineurin-associated defects in Aspergillus nidulans and is involved in mitochondrial function

Colabardini AC, Ries LNA, Brown NA, Savoldi M, Dinamarco TM, Von Zeska MR, Goldman MHS, Goldman GH
PloS One. 2014, 9(8), e104792

Pseudozyma brasiliensis sp nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots

Oliveira JVC, Borges TA, dos Santos RAC, Freitas LFD, Rosa CA, Goldman GH, Riaño-Pachón DM
International Journal of Systematic and Evolutionary Microbiology. 2014, 64, 2159-2168

Quality test protocol to dynamic laser speckle analysis

Moreira J, Cardoso RR, Braga RA
Optics and Lasers in Engineering. 2014, 61, 8-13

Input of sugarcane post-harvest residues into the soil

Carvalho JLN, Otto R, Franco HCJ, Trivelin PCO, Trivellin PCO
Scientia Agricola. 2013, 70(5), 336-344

Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis

Töpfer N, Caldana C, Grimbs S, Willmitzer L, Fernie AR, Nikoloski Z
Plant Cell. 2013, 25(4), 1197-1211

Joint X-ray crystallographic and molecular dynamics study of cellobiohydrolase I from Trichoderma harzianum: deciphering the structural features of cellobiohydrolase catalytic activity

Textor LC, Colussi F, Silveira RL, Serpa VI, de Mello BLS, Muniz JRC, Squina FM, Pereira Jr. N, Skaf MS, Polikarpov I
FEBS Journal. 2013, 280(1), 56- 59

Land demand for ethanol production

Leal MRLV, Nogueira LAH, Cortez LAB
Applied Energy. 2013, 102, 266-271

Lime pretreatment and fermentation of enzymatically hydrolyzed sugarcane bagasse

Rabelo SC, Maciel Filho R, Costa AC
Applied Biochemistry and Biotechnology. 2013, 169(5), 1696-1712

Modularity and evolutionary constraints in a baculovirus gene regulatory network

Oliveira JVde C, Brito AF, Braconi CT, Freire CCde M, Iamarino A, Zanotto PMde A
BMC Systems Biology. 2013, 7, 87

Ozone decay on stainless steel and sugarcane bagasse surfaces

Souza-Correa JA, Oliveira C, Amorim J
European Physical Journal-Applied Physics. 2013, 63(1), 11301-11307

P. brasiliensis virulence is affected by SconC, the negative regulator of inorganic sulfur assimilation

Menino JF, Saraiva M, Gomes- Rezende J, Sturme MH, Pedrosa J, Castro AG, Ludovico P, Goldman GH, Rodrigues Fe
PloS One. 2013, 8(9), e74725

Pedotransfer functions to estimate water retention parameters of soils in northeastern Brazil

Barros AHC, Van Lier QJ, Maia AHN, Scarpare FV
Revista Brasileira de Ciência do Solo. 2013, 37(2), 379-391

Production of xylooligosaccharides (XOS) from delignified sugarcane bagasse by peroxide-HAc process using recombinant xylanase from Bacillus subtilis

Bragatto J, Segato F, Squina FM
Industrial Crops and Products. 2013, 51, 123-129

Purification, partial characterization, and covalent immobilization-stabilization of an extracellular alpha-amylase from Aspergillus niveus

Silva TM, Damásio ARL, Maller AA, Michelin M, Squina FM, Jorge JA, Polizeli MLTM
Folia Microbiologica. 2013, 28(6), 495- 502

Quantifying soil carbon stocks and greenhouse gas fluxes in the sugarcane agrosystem: point of view

Cerri CEP, Galdos MV, Carvalho JLN, Feigl BJ, Cerri CC
Scientia Agricola. 2013, 70(5), 361-368

Ratoon sugarcane yield integrated drip-irrigation and nitrogen fertilization

Uribe RAM, Gava GJC, Saad JCC, Kölln OT
Engenharia Agrícola. 2013, 33(6), 1124-1133

Signal propagation in bayesian networks and its relationship with intrinsically multivariate predictive variables

Martins Jr. DC, de Oliveira EA, Braga-Neto UM, Hashimoto RF, Cesar Jr. RM
Information Sciences. 2013, 225, 18-34

Soil attributes and leaf nitrogen estimating sugar cane quality parameters: Brix, pol and fibre

Rodrigues Jr. FA, Magalhães PSG, Franco HCJ
Precision Agriculture. 2013, 14(3), 270-289

Stalk and sucrose yield in response to nitrogen fertilization of sugarcane under reduced tillage

Fortes C, Trivellin PCO, Vitti AC, Otto R, Franco HCJ, Faroni CE
Pesquisa Agropecuária Brasileira. 2013, 48(1), 88-96

Structure and function of a novel cellulase 5 from sugarcane soil metagenome

Alvarez TM, Paiva JH, Ruiz DM, Cairo JPLF, Pereira IO, Paixão DAA, Almeida RF, Tonoli CCC, Ruller R, Santos CR, Squina FM, Murakami MT
PloS One. 2013, 8(12), e83635

Sugarcane straw availability, quality, recovery and energy use: A literature review

Leal MRLV, Galdos MV, Seabra JEA, Walter A, Oliveira COF
Biomass & Bioenergy. 2013, 53, 11- 19

Systemic analysis of inducible target of rapamycin mutants reveal a general metabolic switch controlling growth in Arabidopsis thaliana

Caldana C, Li Y, Leisse A, Zhang Y, Bartholomaeus L, Fernie AR, Giavalisco P, Willmitzer L
Plant Journal. 2013, 73(6), 897-909

Technical and economic assessment of trash recovery in the sugarcane bioenergy production system

Cardoso TF, Cavalett O, Chagas MF, Morais EC, Carvalho JLN, Franco HCJ, Galdos MV, Scarpare FV, Braunbeck OA, Cortez LAB, Bonomi AMFLJ
Scientia Agricola. 2013, 70(5), 353-360

The capability of endophytic fungi for production of hemicellulases and related enzymes

Robl D, Delabona PS, Mergel CM, Rojas JD, Costa PS, Pimentel IC, Vicente VA, Pradella JGC, Padilla A
BMC Biotechnology. 2013, 13, 94

The characterization of a thermostable and cambialistic superoxide dismutase from Thermus filiformis

Mandelli F, Cairo JPLF, Citadini AP, Büchli F, Alvarez TM, Oliveira RJ, Leite VBP, Paes Leme AF, Mercadanrte AZ, Squina FM
Letters in Applied Microbiology. 2013, 57(1), 40-46

The genome of Anopheles darlingi, the main neotropical malaria vector

Marinotti O, Cerqueira GC, de Almeida LGP, Ferro MIT, Loreto ELS, Zaha A, Teixeira SMR, Wespiser AR, Silva AA, Schlindwein AD, Pacheco ACL, da Silva ALC, Graveley BR, Walenz BP, Lima BA, Ribeiro CAG, Nunes-Silva CG, de Carvalho CR, Soares CMA, de Menezes CBA, Matiolli C, Caffrey D, Araújo DAM, de Oliveira DM, Golenbock D, Grisard EC, Fantinatti-Garboggini F, de Carvalho FM, Barcellos FG, Prosdocimi F, May G, de Azevedo Jr. GM, Guimarães GM, Goldman GH, Padilha IQM, Batista JS, Ferro JA, Ribeiro JMC, Fietto JLR, Dabbas KM, Cerdeira L, Agnez-Lima LF, Brocchi M, de Carvalho MO, Teixeira MM, Maia MMD, Goldman MHS, Schneider MPC, Felipe MSS, Hungria M, Nicolás MF, Pereira M, Montes MA, Cantão ME, Vincentz M, Rafael MS, Silverman N, Stoco PH, Souza RC, Vicentini R, Gazzinelli RT, Neves RO, Silva R, Astolfi-Filho S, Maciel TEF, Ürményi TP, Tadei WP, Camargo EP, de Vasconcelos ATR
Nucleic Acids Research . 2013, 41(15), 7387-7400

The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in d-xylose, l-arabinose and steam-exploded sugarcane bagasse

Souza WR, Maitan- Alfenas GP, Gouvea PF, Brown NA, Savoldi M, Battaglia E, Goldman MHS, Vries RP, Goldman GH
Fungal Genetics and Biology. 2013, 60, 29-45

The inhibition of inflammasome by brazilian propolis (EPP-AF)

Hori JI, Zamboni DS, Carrão DB, Goldman GH, Berretta AA
Evidence-Based Complementary and Alternative Medicine. 2013, 2013, 418508

Tissue-specific cell wall hydration in sugarcane stalks

Maziero P, Jong J, Mendes FM, Gonçalves AR, Eder M, Driemeier CE
Journal of Agricultural and Food Chemistry. 2013, 61, 5841-5847

TLR9 Activation Dampens the Early Inflammatory Response to Paracoccidioides brasiliensis, Impacting Host Survival

Menino JF, Saraiva M, Gomes- Alves AG, Lobo- Silva D, Sturme MH, Gomes-Rezende J, Saraiva AL, Goldman GH, Cunha C, Carvalho A, Romani L, Pedrosa J, Castro AG, Rodrigues F
PLoS Neglected Tropical Diseases. 2013, 7(7), e2317

Transcriptional profiling of Brazilian Saccharomyces cerevisiae strains selected for semi-continuous fermentation of sugarcane must

Brown NA, de Castro PA, Figueiredo BCP, Savoldi M, Buckeridge MS, Lopes ML, Paullilo SCL, Borges EP, Amorim HV, Goldman MHS, Bonatto D, Malavazi I, Goldman GH
FEMS Yeast Research. 2013, 13(3), 277-290

3D imaging of sugarcane bagasse using X-ray microtomography

Isaac AC, Sket F, Rocha GJM, Driemeier CE
Industrial Crops and Products. 2013, 49, 790-793

A designed bifunctional laccase/beta-1,3-1,4-glucanase enzyme shows synergistic sugar release from milled sugarcane bagasse

Furtado GP, Ribeiro LF, Lourenzoni MR, Ward RJ
Protein Engineering Design & Selection. 2013, 26(1), 15-23

Analysis of socio-economic impacts of sustainable sugarcane-ethanol production by means of inter-regional input-output analysis: demonstrated for northeast Brazil

Martínez SH, Van Eijck J, Cunha MP, Guilhoto JJM, Walter A, Faaij A
Renewable & Sustainable Energy Reviews. 2013, 28, 290-316

Aspergillus niger beta-Glucosidase Has a Cellulase-like Tadpole Molecular Shape insights into glycoside hydrolase family 3 (GH3) beta-glucosidase structure and function

Lima MA, Oliveira Neto M, Kadowaki MAS, Rosseto FR, Prates ET, Squina FM, Paes Leme AF, Polikarpov I
Journal of Biological Chemistry. 2013, 288(46), 32991- 33005

Assembling a xylanase-lichenase chimera through all-atom molecular dynamics simulations

Cota J, Oliveira LC, Damásio ARL, Citadini AP, Hoffmam ZB, Alvarez TM, Codima CA, Leite VBP, Pastore GM, Oliveira Neto M, Murakami MT, Ruller R, Squina FM
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. 2013, 1834(8), 1492-1500

Assessment of sugarcane trash for agronomic and energy purposes in Brazil

Franco HCJ, Pimenta MTB, Carvalho JLN, Magalhães PSG, Rossel CEV, Braunbeck OA, Vitti AC, Kölln OT, Rossi Neto J
Scientia Agricola. 2013, 70(5), 305-312

Atmospheric pressure plasma pretreatment of sugarcane bagasse: the influence of moisture in the ozonation process

Souza- Correa JA, Oliveira C, Nascimento VM, Wolf LD, Rocha GJM, Amorim J
Applied Biochemistry and Biotechnology. 2013, 171(1), 104-116

Biomass-to-bio-products application of feruloyl esterase from Aspergillus clavatus

Damásio ARL, Braga CMP, Brenelli LV, Citadini AP, Mandelli F, Cota J, de Almeida RF, Salvador VH, Paixão DAA, Segato F, Mercadante AZ, Neto MO, do Santos WD, Squina FM
Applied Microbiology and Biotechnology. 2013, 97, 6759-6767

Biometeorological indexes determination for grape ‘Niagara Rosada’ (vitis labrusca l.) pruned in different seasons

Scarpare FV, Angelucci LR, Scarpare Filho JA, Silva JQ, Rodrigues A
Revista Brasileira de Fruticultura. 2013, 35(3), 782-789

Biorefineries for the production of first and second generation ethanol and electricity from sugarcane

Dias MOS, Junqueira TL, Cavalett O, Cunha MP, Pavanello LG, de Jesus CDF, Bonomi AMFLJ, Maciel Filho R
Applied Energy. 2013, 109, 72- 78

Brazilian sugarcane ethanol: developments so far and challenges for the future

Walter A, Galdos MV, Scarpare FV, Leal MRLV, Seabra JEA, Cunha MP, Picoli MCA, Oliveira COF
Wiley Interdisciplinary Reviews: Energy and Environment. 2013, 3(1), 70-92

Butanol production in a first-generation Brazilian sugarcane biorefinery: technical aspects and economics of greenfield projects

Mariano AP, Dias MOS, Junqueira TL, Cunha MP, Bonomi AMFLJ, Maciel Filho R
Bioresource Technology. 2013, 135, 316- 323

Carbon stock and humification index of organic matter affected by sugarcane straw and soil management

Segnini A, Carvalho JLN, Bolonhezi D, Milori DMBP, da Silva WTL, Simões ML, Cantarella H, de Maria IC, Martin-Neto L
Scientia Agricola. 2013, 70(5), 321-326

Cellulase on-site production from sugar cane bagasse using Penicillium echinulatum

Pereira BMP, Alvarez TM, Delabona PS, Dillon AJP, Squina FM, Pradella JGC
BioEnergy Research. 2013, 6(3), 1052- 1062

Characterization of a Hexameric Exo-Acting GH51 α-L-Arabinofuranosidase from the Mesophilic Bacillus subtilis

Hoffman ZB, Oliveira LC, Cota J, Alvarez TM, Diogo JA, Neto MO, Citadini APS, Leite VBP, Squina FM, Murakami MT, Ruller R
Molecular Biotechnology. 2013, 55, 260-267

Cogeneration in integrated first and second generation ethanol from sugarcane

Dias MOS, Junqueira TL, Cavalett O, Cunha MP, de Jesus CDF, Mantelatto PE, Rossel CEV, Maciel Filho R, Bonomi AMFLJ
Chemical Engineering Research & Design. 2013, 91(8), 1411-1417

Comparative LCA of ethanol versus gasoline in Brazil using different LCIA methods

Cavalett O, Chagas MF, Seabra JEA, Bonomi AMFLJ
International Journal of Life Cycle Assessment. 2013, 18(3), 647- 658

Contrasting approaches for estimating soil carbon changes in Amazon and cerrado biomes

Maia SMF, Carvalho JLN, Cerri CEP, Lal R, Bernoux M, Galdos MV, Cerri CC
Soil and Tillage Research. 2013, 133, 75-84

Correlation between chemical soil attributes and sugarcane quality parameters according to soil texture zones

Rodrigues Jr. FA, Magalhães PSG, Franco HCJ, Beauclair EGF, Cerri DGP
Soil Science. 2013, 178(3), 147- 156

CRAFS: a model to analyze two-dimensional X-ray diffraction patterns of plant cellulose

Oliveira RP, Driemeier CE
Journal of Applied Crystallography. 2013, 46(4), 1196-1210

Crystallite width determines monolayer hydration across a wide spectrum of celluloses isolated from plants

Driemeier CE, Bragatto J
J. Phys. Chem. B. 2013, 117(1), 415-421

Deciphering the synergism of endogenous glycoside hydrolase families 1 and 9 from Coptotermes gestroi

Cairo JPLF, Oliveira LC, Uchima CA, Alvarez TM, Citadini AP, Cota J, Leonardo FC, Costa-Leonardo AM, Carazzolle MF, Costa FF, Pereira GAG, Squina FM
Insect Biochemistry and Molecular Biology. 2013, 43(10), 970-981

Decomposition of lignin from sugar cane bagasse during ozonation process monitored by optical and mass spectrometries

Souza-Correa JA, Ridenti MA, Oliveira C, Araújo SR, Amorim J
Journal of Physical Chemistry B. 2013, 117(11), 3110-3119

Determining a critical nitrogen dilution curve for sugarcane

Oliveira ECA, Gava GJC, Trivelin PCO, Otto R, Franco HCJ
Journal of Plant Nutrition and Soil Science. 2013, 176(5), 712-723

Development and biotechnological application of a novel endoxylanase family GH10 identified from sugarcane soil metagenome

Alvarez TM, Goldbeck R, dos Santos CR, Paixão DAA, Gonçalves TA, Cairo JPLF, Almeida RF, Rocha GJM, Cota J, Büchli F, Citadini AP, Ruller R, Polo CC, Oliveira Neto M, Murakami MT, Squina FM
PloS One. 2013, 8(7), e70014

Diluted phosphoric acid pretreatment for production of fermentable sugars in a sugarcane-based biorefinery

Vasconcelos SM, Santos AMP, Rocha GJM, Souto-Maior AM
Bioresource Technology. 2013, 135, 46-52

D-Xylose detection in Escherichia coli by a xylose binding protein-dependent response

Ribeiro LF, Bressan F, Furtado GP, Meireles F, Ward RJ
Journal of Biotechnology. 2013, 168(4), 440-445

Effect of sugarcane-planting row directions on ALOS/PALSAR satellite images

Picoli MCA, Lamparelli RAC, Sano EE, de Mello JRB, Rocha JV
GIScience & Remote Sensing. 2013, 50(3), 349-357

Effect of xylan and lignin removal by hydrothermal pretreatment on enzymatic conversion of sugarcane bagasse cellulose for second generation ethanol production

Rocha GJM, Silva VFN, Martín C, Gonçalves AR, Nascimento VM, Souto-Maior AM
Sugar Tech. 2013, 15(4), 390-398

Engineering the pattern of protein glycosylation modulates the thermostability of a GH11 xylanase

Fonseca-Maldonado R, Vieira DS, Alponti JS, Bonneil E, Thibault P, Ward RJ
Journal of Biological Chemistry. 2013, 288(35), 25522-25534

Enhancing xylanases production by a new Amazon Forest strain of Aspergillus oryzae using solid-state fermentation under controlled operation conditions

Pirota RDPB, Tonelotto M, Delabona PS, Fonseca RF, Paixão DAA, Baleeiro FCF, Bertucci Neto V, Farinas CS
Industrial Crops and Products. 2013, 45, 465- 471

Environmental benefits of the integrated production of ethanol and biodiesel

Souza SP, Seabra JEA
Applied Energy. 2013, 102, 5-12

Evaluation of mucoadhesive gels with propolis (EPP-AF) in preclinical treatment of candidiasis vulvovaginal infection

Berretta AA, Castro PA, Cavalheiro AH, Fortes VS, Ramalho LNZ, Bom VP, Nascimento AP, Marquele- Oliveira F, Pedrazzi V, Goldman GH
Evidence-Based Complementary and Alternative Medicine. 2013, 2013, 641480

Evaluation of process configurations for second generation integrated with first generation bioethanol production from sugarcane

Dias MOS, Junqueira TL, Rossel CEV, Maciel Filho R, Bonomi AMFLJ
Fuel Processing Technology. 2013, 109, 84-89

Evaluation of the alcoholic fermentation kinetics of enzymatic hydrolysates from sugarcane bagasse (Saccharum officinarum L.)

de Andrade RR, Rabelo SC, Maugeri Filho F, Maciel Filho R, Costa AC
Journal of Chemical Technology and Biotechnology. 2013, 88(6), 1049-1057

Experimental mixture design as a tool to enhance glycosyl hydrolases production by a new Trichoderma harzianum P49P11 strain cultivated under controlled bioreactor submerged fermentation

Delabona PS, Farinas CS, Lima DJS, Pradella JGC
Bioresource Technology. 2013, 132, 401-405

Ferulic acid and derivatives: molecules with potential application in the pharmaceutical field

de Paiva LBB, Goldbeck R, dos Santos WD, Squina FM
Brazilian Journal of Pharmaceutical Sciences. 2013, 49(3), 395-411

Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production

Brown NA, Gouvea PF, Krohn NG, Savoldi M, Goldman GH
Biotechnology for Biofuels. 2013, 6(1), 91-108

Functional characterization of Aspergillus nidulans ypkA, a homologue of the mammalian kinase SGK

Colabardini AC, Brown NA, Savoldi M, Goldman MHS, Goldman GH
PloS One. 2013, 8(3), e57630

Genetic bypass of Aspergillus nidulans crzA function in calcium homeostasis

Almeida RS, Loss O, Colabardini AC, Brown NA, Bignell E, Savoldi M, Pantano S, Goldman MHS, Arst Jr. HN, Goldman GH
G3: Genes| Genomes| Genetics. 2013, 3(7), 1129- 1141

Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31

Peña-Montenegro TD, Dussán J
Standards in Genomic Sciences. 2013, 9(1), 42-56

High cell density co-culture for production of recombinant hydrolases

Silva MR, Severo MG, Delabona PS, Ruller R, Pradella JGC, Gonçalves VM, Azzoni SF
Biochemical Engineering Journal. 2013, 71, 38-46

High-cell-density culture strategies for polyhydroxyalkanoate production: a review

Ienczak JL, Schmidell W, de Aragão GMF
Journal of Industrial Microbiology & Biotechnology. 2013, 40(3-4), 275-286

How much sugarcane trash should be left on the soil?

Cantarella H, Cerri CEP, Carvalho JLN, Magalhães PSG
Scientia Agricola. 2013, 70(5), 295-296

Identification of glucose transporters in Aspergillus nidulans

dos Reis TF, Menino JF, Bom VLP, Brown NA, Colabardini AC, Savoldi M, Goldman MHS, Rodrigues F, Goldman GH
PloS One. 2013, 8(11), e81412

Identification of Metabolic Pathways Influenced by the G-Protein Coupled in Aspergillus nidulans

Souza WR, Morais ER, Krohn NG, Savoldi M, Goldman MHS, Rodrigues F, Caldana C, Semelka CT, Tikunov AP, Macdonald JM, Goldman GH
PloS One. 2013, 8(5), e62088

Identification of the cell targets important for propolis-induced cell death in Candida albicans

Castro PA, Bom VLP, Brown NA, Almeida RSC, Ramalho LNZ, Savoldi M, Goldman MHS, Berretta AA, Goldman GH
Fungal Genetics and Biology. 2013, 60, 74-86

Impact of nitrogen and sulphur fertilisers on yield and quality of sugarcane plant crop

Bologna- Campbell I, Franco HCJ, Vitti AC, Faroni CE, Costa MCG, Trivelin PCO
Sugar Tech. 2013, 15(4), 424-428

Impact of sugarcane trash on fertilizer requirements for Sao Paulo, Brazil

Trivelin PCO, Franco HCJ, Otto R, Ferreira DA, Vitti AC, Fortes C, Faroni CE, Oliveira ECA, Cantarella H
Scientia Agricola. 2013, 70(5), 345-352

Improving the extraction conditions of endoglucanase produced by Aspergillus Niger under solid-state fermentation

Pirota RDPB, Miotto LS, Delabona PS, Farinas CS
Brazilian Journal of Chemical Engineering. 2013, 30(1), 117- 123

Increase in ethanol production from sugarcane bagasse based on combined pretreatments and fed-batch enzymatic hydrolysis

Wanderley MCA, Martín C, Rocha GJM, Gouveia ER
Bioresource Technology. 2013, 128, 448-453

Increased production of cellulases and xylanases by Penicillium echinulatum S1M29 in batch and fed-batch culture

Reis L, Fontana RC, Delabona PS, Lima DJS, Camassola M, Pradella JGC, Dillon AJP
Bioresource Technology. 2013, 146, 597- 603

Incubation methods for assessing mineralizable nitrogen in soils under sugarcane

Mariano E, Trivelin PCO, Leite JM, Megda MXV, Otto R, Franco HCJ
Revista Brasileira de Ciência do Solo. 2013, 37(2), 450- 461

Industrial-scale steam explosion pretreatment of sugarcane straw for enzymatic hydrolysis of cellulose for production of second generation ethanol and value-added products

Oliveira FMV, Pinheiro IO, Souto-Maior AM, Martín C, Gonçalves AR, Rocha GJM
Bioresource Technology. 2013, 130, 168-173

Influence of pH on the molecular weight of poly-3-hydroxybutyric acid (P3HB) produced by recombinant Escherichia coli

Bocanegra JK, Pradella JGC, da Silva LF, Taciro MK, Gomez JGC
Applied Biochemistry and Biotechnology. 2013, 170(6), 1336-1347

Life cycle assessment of bioethanol-based PVC. Part 1: Attributional approach

Alvarenga RAF, Dewulf J, De Meester S, Wathelet A, Villers J, Thommeret R, Hruska Z
Biofuels Bioproducts & Biorefining-Biofpr. 2013, 7(4), 386-393

Low-energy electron scattering by cellulose and hemicellulose components

Oliveira EM, Costa RF, Sanchez SD, Natalense APP, Bettega MHF, Lima MAP, Varella MTN
Physical Chemistry Chemical Physics. 2013, 15(5), 1682- 1689

Non-Maxwellian velocity distributions and non-Gaussian profiles of H atoms in low-pressure hydrogen discharges

Loureiro J, Amorim J
Plasma Sources Science & Technology. 2013, 22(1), 015016

Sodium citrate and potassium phosphate as alternative adsorption buffers in hydrophobic and aromatic thiophilic chromatographic purification of plasmid DNA from neutralized lysate

Bonturi N, Radke VSCO, Bueno SMA, Azzoni SF, Azzoni AR, Miranda EA
Journal of Chromatography B-Analytical Technologies in The Biomedical and Life Sciences. 2013, 919-920, 67-74

Soil greenhouse gas fluxes from vinasse application in Brazilian sugarcane areas

Oliveira BG, Carvalho JLN, Cerri CEP, Cerri CC, Feigl BJ
Geoderma. 2013, 200-201, 77- 84

Treatment of sugarcane bagasse lignin employing atmospheric pressure microplasma jet in argon

Amorim J, Oliveira C, Souza-Correa JA, Ridenti MA
Plasma Processes and Polymers. 2013, 10(8), 670-678

Trends in global warming and human health impacts related to brazilian sugarcane ethanol production considering black carbon emissions

Galdos MV, Cavalett O, Seabra JEA, Nogueira LAH, Bonomi AMFLJ
Applied Energy. 2013, 104, 576- 582

Understanding the cellulolytic system of Trichoderma harzianum P49P11 and enhancing saccharification of pretreated sugarcane bagasse by supplementation with pectinase and alpha-L-arabinofuranosidase

Delabona PS, Cota J, Hoffmam ZB, Paixão DAA, Farinas CS, Cairo JPLF, Lima DJS, Squina FM, Ruller R, Pradella JGC
Bioresource Technology. 2013, 131, 500-507

Utilization of pentoses from sugarcane biomass: techno-economics of biogas vs. butanol production

Mariano AP, Dias MOS, Junqueira TL, Cunha MP, Bonomi AMFLJ, Maciel Filho R
Bioresource Technology. 2013, 142, 390-399

Contribution of nitrogen from sugarcane harvest residues and urea for crop nutrition

Fortes C, Vitti AC, Otto R, Ferreira DA, Franco HCJ, Trivelin PCO
Scientia Agricola. 2013, 70(5), 313-320

Agronomic efficiency of nitrogen fertilizers on green harvesting sugarcane ratoon

Megda MXV, Trivelin PCO, Franco HCJ, Otto R, Vitti AC
Pesquisa Agropecuária Brasileira. 2012, 47(12), 1681-1690

Ammonia losses estimated by an open collector from urea applied to sugarcane straw

Mariano E, Trivelin PCO, Vieira MX, Leite JM, Otto R, Franco HCJ
Revista Brasileira de Ciência do Solo. 2012, 36(2), 411-419

Aspergillus fumigatus mitochondrial electron transport chain mediates oxidative stress homeostasis, hypoxia responses and fungal pathogenesis

Grahl N, Dinamarco TM, Willger SD, Goldman GH, Cramer RA
Molecular Microbiology. 2012, 84(2), 383-399

Carbon source pulsed feeding to attain high yield and high productivity in poly(3-hydroxybutyrate) (PHB) production from soybean oil using Cupriavidus necator

Pradella JGC, Ienczak JL, Delgado CR, Taciro MK
Biotechnology Letters. 2012, 34(6), 1003-1007

Cellulose crystals in fibrovascular bundles of sugarcane culms: orientation, size, distortion, and variability

Driemeier CE, dos Santos WD, Buckeridge MS
Cellulose. 2012, 19(5), 1507-1515

Characterization of depolymerized residues from extremely low acid hydrolysis (ELA) of sugarcane bagasse cellulose: Effects of degree of polymerization, crystallinity and crystallite size on thermal decomposition

Gurgel LVA, Marabezi K, Ramos LA, Curvelo AAS
Industrial Crops and Products. 2012, 36(1), 560-571

Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions

Klie S, Caldana C, Nikoloski Z
Frontiers in Plant Science. 2012, 3, 249

Configuration-dependent diffusion dynamics of downhill and two-state protein folding

Xu W, Lai Z, Oliveira RJ, Leite VBP, Wang J
Journal of Physical Chemistry B. 2012, 116(17), 5152- 5159

Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168

dos Santos CR, Paiva JH, Sforça ML, Neves JL, Navarro RZ, Cota J, Akao PK, Hoffmam ZB, Meza AN, Smetana JHC, Nogueira MLC, Polikarpov I, Xavier Neto J, Squina FM, Ward RJ, Ruller R, Zeri ACM, Murakami MT
Biochemical Journal. 2012, 441(1), 95-104

Dynamic vapor sorption and thermoporometry to probe water in celluloses

Driemeier CE, Mendes FM, de Oliveira MM
Cellulose. 2012, 19(4), 1051-1063

Electronic excitation of gas-phase furan molecules by electron impact

Costa RF, Bettega MHF, Lima MAP, Lopes MCA
Physical Review A. 2012, 85(6), 062706

Emergy evaluation of organic and conventional marine shrimp farms in Guaraira Lagoon, Brazil

Lima JSG, Rivera EC, Focken U
Journal of Cleaner Production. 2012, 35, 194-202

Endo-xylanase GH11 activation by the fungal metabolite eugenitin

Andrioli WJ, Damásio ARL, Silva VB, Maller AA, Nanayakkara NPD, da Silva CHTP, Polizeli MLTM, Bastos JK
Biotechnology Letters. 2012, 34(8), 1487- 1492

Enhancement of the enzymatic digestibility of sugarcane bagasse by steam pretreatment impregnated with hydrogen peroxide

Rabelo SC, Rossel CEV, Rocha GJM, Zacchi G
Biotechnology Progress. 2012, 28(5), 1207-1217

Environmental and economic assessment of sugarcane first generation biorefineries in Brazil

Cavalett O, Junqueira TL, Dias MOS, de Jesus CDF, Mantelatto PE, Cunha MP, Franco HCJ, Cardoso TF, Maciel Filho R, Rossel CEV, Bonomi AMFLJ
Clean Technologies and Environmental Policy. 2012, 14(3), 399-410

Enzyme loading dependence of cellulose hydrolysis of sugarcane bagasse

Martín C, Rocha GJM, dos Santos JRA, Wanderley MCA, Gouveia ER
Química Nova. 2012, 35(10), 1927-1930

Ethanol from sugarcane in Brazil: a ‘midway’ strategy for increasing ethanol production while maximizing environmental benefits

Buckeridge MS, de Souza AP, Arundale RA, Anderson-Teixeira KJ, DeLucia EH
Global Change Biology Bioenergy. 2012, 4(2), 119-126

Evaluation of Barros and Wolf efficiency correlations for conventional and extractive distillation columns in bioethanol production process

Junqueira TL, Maciel MRW, Maciel Filho R
Separation Science and Technology. 2012, 47(7), 1031-1037

Functional characterization and oligomerization of a recombinant xyloglucan-specific endo-beta-1,4-glucanase (GH12) from Aspergillus niveus

Damásio ARL, Ribeiro LFC, Ribeiro LF, Furtado GP, Segato F, Almeida FBR, Crivellari AC, Buckeridge MS, Souza TACB, Murakami MT, Ward RJ, Prade RA, Polizeli MLTM
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. 2012, 1824(3), 461-467

Functional characterization and synergic action of fungal xylanase and arabinofuranosidase for production of xylooligosaccharides

Gonçalves TA, Damásio ARL, Segato F, Alvarez TM, Bragatto J,de Paiva LBB, Citadini AP, Murakami MT, Ruller R, Paes Leme AF, Squina FM, Prade RA
Bioresource Technology. 2012, 119, 293-299

Functional characterization of an Aspergillus fumigatus calcium transporter (PmcA) that is essential for fungal infection

Dinamarco TM, Freitas FZ, Almeida RS, Brown NA, dos Reis TF, Ramalho LNZ, Savoldi M, Goldman MHS, Bertolini MC, Goldman GH
PloS One. 2012, 7(5), e37591-1-14

Growth, photosynthetic activity, and potassium and sodium concentration in rice plants under salt stress

Morales SG, Trejo-Téllez LI, Merino FCG, Caldana C, Espinosa-Victoria D, Cabrera BEH
Acta Scientiarum-Agronomy. 2012, 3(3), 317-324

High-yield secretion of multiple client proteins in Aspergillus

Segato F, Damásio ARL, Gonçalves TA, Lucas RC, Squina FM, Decker SR, Prade RA
Enzyme and Microbial Technology. 2012, 51(2), 100-106

Identification of novel interaction between ADAM17 (a disintegrin and metalloprotease 17) and Thioredoxin-1

Aragão AZB, Nogueira MLC, Granato DC, Simabuco FM, Honorato RV, Hoffmam ZB, Yokoo S, Laurindo FRM, Squina FM, Zeri ACM, de Oliveira PSL, Sherman NE, Paes Leme AF
Journal of Biological Chemistry. 2012, 287(51), 43071-43082

Improving bioethanol production – comparison between extractive and low temperature fermentation

Dias MOS, Junqueira TL, de Jesus CDF, Rossel CEV, Maciel Filho R, Bonomi AMFLJ
Applied Energy. 2012, 98, 548-555

Improving second generation ethanol production through optimization of first generation production process from sugarcane

Dias MOS, Junqueira TL, de Jesus CDF, Rossel CEV, Vergasta CC, Maciel Filho R, Bonomi AMFLJ
Energy. 2012, 43(1), 246-252

Insights on how the activity of an endoglucanase is affected by physical properties of insoluble celluloses

Bragatto J, Segato F, Cota J, Mello DB, de Oliveira MM, Buckeridge MS, Squina FM, Driemeier CE
Journal of Physical Chemistry B. 2012, 116(21), 6128-6136

Mass balance of pilot-scale pretreatment of sugarcane bagasse by steam explosion followed by alkaline delignification

Rocha GJM, Martín C, da Silva VFN, Gómez EO, Gonçalves AR
Bioresource Technology. 2012, 111, 447-452

Metastable atomic species in the N-2 flowing afterglow

Levaton J, Amorim J
Chemical Physics. 2012, 397(3), 9-17

Molecular characterization of the Aspergillus nidulans fbxA encoding an F-box protein involved in xylanase induction

Colabardini AC, Humanes AC, Gouvea PF, Savoldi M, Goldman MHS, Kress MRvon Z, Bayram O, Oliveira JVC, Gomes MD, Braus GH, Goldman GH
Fungal Genetics and Biology. 2012, 49(2), 130-140

Molecular characterization of the putative transcription factor SebA involved in virulence in Aspergillus fumigatus

Dinamarco TM, Almeida RS, de Castro PA, Brown NA, dos Reis TF, Ramalho LNZ, Savoldi M, Goldman MHS, Goldman GH
Eukaryotic Cell. 2012, 11(4), 518-531

Morphological heterogeneity of Paracoccidioides brasiliensis: relevance of the Rho-like GTPase PbCDC42

Menino JF, Osório NS, Sturme MH, Barros D, Gomes- Alves AG, Almeida AJ, Ludovico P, Costa P, Goldman GH, Rodrigues F
Medical Mycology. 2012, 50(7), 768- 774

Optical and electrical diagnostics of a spark-plug discharge in air

Oliveira C, Reis Jr. JL, Souza-Correa JA, Dal Pino Jr. A, Amorim J
Journal of Physics D-Applied Physics. 2012, 45(25), 255201

Optimum ratio of calcium and boron in the nutrient solution or in castor bean shoot for fruit yield and seed oil content

Franco HCJ, Lavres Jr. J, Oliveira Ad, Matias GCS, Cabral CP, Malavolta E
Journal of Plant Nutrition. 2012, 35(3), 413- 427

Power generation from sugarcane biomass – a complementary option to hydroelectricity in Nepal and Brazil

Khatiwada D, Seabra JEA, Silveira S, Walter ACS
Energy. 2012, 48(1), 241-254

Shape resonance spectra of lignin subunits

Oliveira EM, Sanchez SD, Bettega MHF, Natalense APP, Lima MAP, Varella MTN
Physical Review A. 2012, 86(2), 020701

Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function

Jamros MA, Oliveira LC, Whitford PC, Onuchic JN, Adams JA, Jennings PA
PLoS Computational Biology. 2012, 8(9), e1002695

Sugarcane as a carbon source: the brazilian case

do Lago AC, Bonomi AMFLJ, Cavalett O, Cunha MP, Lima MAP
Biomass & Bioenergy. 2012, 46, 5-12

The Penicillium echinulatum Secretome on Sugar Cane Bagasse

Cota J, Alvarez TM, Brüchli F, Bragatto J, Pereira BMP, Pauletti BA, Rocha GJM, Pimenta MTB, Murakami MT, Camassola M, Ruller R, Dillon AJP, Pradella JGC, Paes Leme AF, Squina FM
PloS One. 2012, 7(12), e50571

Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches

Caldana C, Fernie AR, Willmitzer L, Steinhauser D
Frontiers in Plant Science. 2012, 3, 267

Use of a new Trichoderma harzianum strain isolated from the Amazon rainforest with pretreated sugar cane bagasse for on-site cellulase production

Delabona PS, Farinas CS, da Silva MR, Azzoni SF, Pradella JGC
Bioresource Technology. 2012, 107, 517-521

Accounting greenhouse gas emissions in the lifecycle of brazilian sugarcane bioethanol: methodological references in European and American regulations

Khatiwada D, Seabra JEA, Silveira S, Walter ACS
Energy Policy. 2012, 47, 384-397

Additional role of O-acetylserine as a sulfur status-independent regulator during plant growth

Hubberten H-M, Klie S, Caldana C, Degenkolbe T, Willmitzer L, Hoefgen R
Plant Journal. 2012, 70(4), 666-677

Aspergillus fumigatus calcineurin interacts with a nucleoside diphosphate kinase

Dinamarco TM, Brown NA, Almeida RSC, Castro PA, Savoldi M, Goldman MHS, Goldman GH
Microbes and Infection. 2012, 14(11), 922- 929

Correlation of physical and chemical attributes of soil with sugarcane yield

Cerri DGP, Magalhães PSG
Pesquisa Agropecuária Brasileira. 2012, 47(4)

Dilute acid hydrolysis of sugar cane bagasse at high temperatures: a kinetic study of cellulose saccharification and glucose decomposition. Part I: sulfuric acid as the catalyst

Gurgel LVA, Marabezi K, Zanbom MD, Curvelo AAS
Industrial & Engineering Chemistry Research. 2012, 51(3), 1173-1185

Integrated versus stand-alone second generation ethanol production from sugarcane bagasse and trash

Dias MOS, Junqueira TL, Cavalett O, Cunha MP, de Jesus CDF, Rossel CEV, Maciel Filho R, Bonomi AMFLJ
Bioresource Technology. 2012, 103(1), 152-161

Low liquid-solid ratio (LSR) hot water pretreatment of sugarcane bagasse

Vallejos ME, Zambon MD, Area MC, Curvelo AAS
Green Chemistry. 2012, 14(7), 1982-1989

Molecular insights into substrate specificity and thermal stability of a bacterial GH5-CBM27 endo-1,4-Beta-D-mannanase

dos Santos CR, Paiva JH, Meza AN, Cota J, Alvarez TM, Ruller R, Prade RA, Squina FM, Murakami MT
Journal of Structural Biology. 2012, 177(2), 469-476

Some simplified geometrical properties of elephant grass and sugarcane trash particles

Gómez EO, Cortez LAB, Alarcon GR, Rocha GJM, da Silva VFN, de Almeida E
Fuel Processing Technology. 2012, 104, 234-244

Steam explosion pretreatment reproduction and alkaline delignification reactions performed on a pilot scale with sugarcane bagasse for bioethanol production

Rocha GJM, Gonçalves AR, Oliveira BR, Olivares EG, Rossel CEV
Industrial Crops and Products. 2012, 35(1), 274-279

Sugarwin: a sugarcane insect-induced gene with antipathogenic activity

Medeiros AH, Franco FP, Matos JL, de Castro PA, Santos-Silva LK, Henrique-Silva F, Goldman GH, Moura DS, Silva-Filho MC
Molecular Plant-Microbe Interactions. 2012, 25(5), 613-624

The COP9 signalosome counteracts the accumulation of cullin SCF ubiquitin E3 RING ligases during fungal development

von Zeska Kress MR, Harting R, Bayram O, Christmann M, Irmer H, Valerius O, Schinke J, Goldman GH, Braus GH
Molecular Microbiology. 2012, 83(6), 1162-1177

The local dissociation phenomenon in a nitrogen afterglow

Levaton J, Amorim J, Ricard A
Journal of Physics D-Applied Physics. 2012, 45(50), 505203

Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding

Wang J, Oliveira RJ, Chu X, Whitford PC, Chahine J, Wang E, Onuchic JN, Leite VBP
Proceedings of The National Academy of Sciences of the United States of America. 2012, 109(39), 15763-15768

Transcriptional profiling of Saccharomyces cerevisiae exposed to propolis

Castro PA, Savoldi M, Bonatto D, Malavazi I, Goldman MHS, Berretta AA, Goldman GH
BMC Complementary and Alternative Medicine. 2012, 12(194)

Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber

Segato F, Damásio ARL, Gonçalves TA, Murakami MT, Squina FM, Polizeli MLTM, Mort AJ, Prade RA
Biotechnology for Biofuels. 2012, 5, 21

A study on the pretreatment of a sugarcane bagasse sample with dilute sulfuric acid

Canilha L, Santos VTO, Rocha GJM, Silva JBA, Giulletti M, Silva SS, Felipe MGA, Ferraz A, Milagres AMF, Carvalho W
Journal of Industrial Microbiology & Biotechnology. 2011, 38(9), 1467-1475

An experimental and theoretical investigation into positron and electron scattering from formaldehyde

Zecca A, Trainotti E, Chiari L, Garcia G, Blanco F, Bettega MHF, Varella MTN, Lima MAP, Brunger MJ
Journal of Physics B-Atomic Molecular and Optical Physics. 2011, 44(8), 195202

Anomalous doppler broadening caused by exothermic reactions: application to hydrogen balmer lines

Loureiro J, Amorim J
European Physical Journal D. 2011, 63(3), 421-429

Chemical and physico-chemical characterization of lignins obtained from ethanol-water fractionation of bagasse

Vallejos ME, Felissia FE, Curvelo AAS, Zambon MD, Ramos L, Area MC
BioResources. 2011, 6(2), 1158-1171

Comparative genomic analysis of human fungal pathogens causing Paracoccidioidomycosis

Desjardins C, Champion MD, Holder JW, Goldberg J, Muszewska A, Bailao AM, Brigido MM, Ferreira MES, Garcia AM, Goldman GH
PLoS Genetics. 2011, 7(10), e1002345

Development and evaluation performance of a punch planter for direct sowing of corn

Fabretti DR, Resende RC, Queiroz DM, Fernandes HC, Solza CM
Revista Brasileira de Engenharia Agrícola e Ambiental. 2011, 15(2), 199-204

Dilute mixed-acid pretreatment of sugarcane bagasse for ethanol production

Rocha GJM, Martín C, Soares IB, Souto-Maior AM, Baudel HM, de Abreu CAM
Biomass & Bioenergy. 2011, 35, 663-670

Environmental and economic assessment of bioethanol, sugar and bioelectricity production from sugarcane

Cavalett O, Cunha MP, Junqueira TL, Dias MOS, de Jesus CDF, Mantelatto PE, Cardoso TF, Franco HCJ, Maciel Filho R, Bonomi AMFLJ
Chemical Engineering Transactions. 2011, 25, 1007-1012

Enzymatic hydrolysis of pretreated sugar cane bagasse using Penicillium funiculosum and Trichoderma harzianum cellulases

Maeda RN, Serpa VI, Rocha VAL, Mesquita RAA, Anna LMMS, Driemeier CE, Pereira Jr. N, Polikarpov I
Process Biochemistry. 2011, 46(5), 1196- 1201

Farnesol-induced cell death in the filamentous fungus Aspergillus nidulans

Dinamarco TM, Goldman MHS, Goldman GH
Biochemical Society Transactions. 2011, 39(5), 1544-1548

Cell wall polysaccharides from fern leaves: evidence for a mannan-rich type III cell wall in Adiantum raddianum

Silva GB, Ionashiro M, Carrara TB, Crivellari AC, Tiné MAS, Prado J, Carpita NC, Buckeridge MS
Phytochemistry. 2011, 72(18), 2352-2360

Characterization of sugarcane bagasse powders

Driemeier CE, de Oliveira MM, Mendes FM, Gómez EO
Powder Technology. 2011, 214(1), 111-116

Delignification of sugarcane bagasse using glycerol-water mixtures to produce pulps for saccharification

Novo LP, Gurgel LVA, Marabezi K, Curvelo AAS
Bioresource Technology. 2011, 102(21), 10040-10046

Ethanol production from enzymatic hydrolysis of sugarcane bagasse pretreated with lime and alkaline hydrogen peroxide

Rabelo SC, Fonseca NAA, de Andrade RR, Maciel Filho R, Costa AC
Biomass & Bioenergy. 2011, 35(7), 2600-2607

Evolution of cellulose crystals during prehydrolysis and soda delignification of sugarcane lignocellulose

Driemeier CE, Pimenta MTB, Rocha GJM, Oliveira MM, de Mello DB, Maziero P, Gonçalves AR
Cellulose. 2011, 18(6), 1509-1519

Functional and biophysical characterization of a hyperthermostable GH51 alpha-L-arabinofuranosidase from Thermotoga petrophila

dos Santos CR, Squina FM, Meza AN, Oldiges DP, Paes Leme AF, Ruller R, Mort AJ, Prade RA, Murakami MT
Biotechnology Letters. 2011, 33(1), 131-137

Functional characterization and target discovery of glycoside hydrolases from the digestome of the lower termite Coptotermes gestroi

Cairo JPLF, Paes Leme AF, Leonardo FC, Ribeiro DA, Büchli F, Costa-Leonardo AM, Carazzolle MF, Costa FF, Pereira GAG, Squina FM
Biotechnology for Biofuels. 2011, 4, 50

Heterologous expression of an Aspergillus niveus xylanase GH11 in Aspergillus nidulans and its characterization and application

Damásio ARL, Silva TM, Almeida FBR, Squina FM, Ribeiro DA, Paes Leme AF, Segato F, Prade RA, Jorge JA, Terenzi HF, Polizeli MLTM
Process Biochemistry. 2011, 46(6), 1236-1242

High soil penetration resistance reduces sugarcane root system development

Otto R, Silva AP, Franco HCJ, Oliveira ECA, Trivellin PCO
Soil & Tillage Research. 2011, 117, 201-2010

High-temperature enzymatic breakdown of cellulose

Wang H, Squina FM, Segato F, Mort AJ, Lee D, Pappan K, Prade R
Applied and Environmental Microbiology. 2011, 77(15), 5199- 5206

Inference of gene regulatory networks from time series by Tsallis entropy

Lopes FM, de Oliveira EA, Cesar Jr. RM
BMC Systems Biology. 2011, 5, 61

Involvement of an Alternative Oxidase in Oxidative Stress and Mycelium-to-Yeast Differentiation in Paracoccidioides brasiliensis

Martins VP, Dinamarco TM, Soriani FM, Tudella VG, Oliveira SC, Goldman GH, Curti C, Uyemura SA
Eukaryotic Cell. 2011, 10(2), 237-248

Kinetics of lime pretreatment of sugarcane bagasse to enhance enzymatic hydrolysis

Fuentes LLG, Rabelo SC, Maciel Filho R, Costa AC
Applied Biochemistry and Biotechnology. 2011, 163(5), 612- 625

Life cycle assessment of Brazilian sugarcane products: GHG emissions and energy use

Seabra JEA, Macedo IC, Chum HL, Faroni CE, Sarto CA
Biofuels Bioproducts & Biorefining-Biofpr. 2011, 5(5), 519-532

Mode of operation and low-resolution structure of a multi-domain and hyperthermophilic endo-Beta-1,3-glucanase from Thermotoga petrophila

Cota J, Alvarez TM, Citadini AP, dos Santos CR, Oliveira Neto M, Oliveira RR, Pastore GM, Ruller R, Prade RA, Murakami MT, Squina FM
Biochemical and Biophysical Research Communications. 2011, 406(4), 590-594

Nutritional reserves of Vochysiaceae seeds: chemical diversity and potential economic uses

Mayworm MAS, Buckeridge MS, Marquez UML, Salatino A
Anais da Academia Brasileira de Ciências. 2011, 83(2), 523- 531

Occupancy of rotational population in molecular spectra based on nonextensive statistics

Reis Jr. JL, Amorim J, Dal Pino Jr. A
Physical Review E. 2011, 83(1), 017401

Optical and morphological properties of N-doped TiO2 thin films

Grigorov KG, Oliveira IC, Maciel HS, Massi M, Oliveira Jr. MS, Amorim J, Cunha CA
Surface Science. 2011, 605(7-8), 775- 782

Scientific challenges of bioethanol production in Brazil

Amorim HV, Lopes ML, Oliveira JVC, Buckeridge MS, Goldman GH
Applied Microbiology and Biotechnology. 2011, 91(5), 1267-1275

Second generation ethanol in Brazil: can it compete with electricity production?

Dias MOS, Cunha MP, de Jesus CDF, Rocha GJM, Pradella JGC, Rossel CEV, Maciel Filho R, Bonomi AMFLJ
Bioresource Technology. 2011, 102(19), 8964-8971

Simulation and evaluation of autonomous and annexed sugarcane distilleries

Junqueira TL, Dias MOS, de Jesus CDF, Cunha MP, Cavalett O, Maciel Filho R, Rossel CEV, Bonomi AMFLJ
Chemical Engineering Transactions. 2011, 25, 941-946

Simulation of integrated first and second generation bioethanol production from sugarcane: comparison between different biomass pretreatment methods

Dias MOS, Cunha MP, Maciel Filho R, Bonomi AMFLJ, de Jesus CDF, Rossel CEV
Journal of Industrial Microbiology & Biotechnology. 2011, 38(8), 955-966

Stigma/style cell cycle inhibitor 1 (SCI1), a tissue-specific cell cycle regulator that controls upper pistil development

DePaoli HC, Brito MS, Quiapim AC, Teixeira SP, Goldman GH, Dornelas MC, Goldman MHS
New Phytologist. 2011, 190(4), 882-895

Structural matching of 2D electrophoresis gels using deformed graphs

Noma A, Pardo A, Cesar Jr. RM
Pattern Recognition Letters. 2011, 32(1), 3-11

Structure of a novel thermostable GH51 alpha-L-arabinofuranosidase from Thermotoga petrophila RKU-1

Souza TACB, dos Santos CR, Oldiges DP, Ruller R, Prade R, Squina FM, Murakami MT
Protein Science. 2011, 20(9), 1632-1637

Sugarcane Response to Boron and Zinc in Southeastern Brazil

Franco HCJ, Mariano E, Vitti AC, Faroni CE, Otto R, Trivelin PCO
Sugar Tech. 2011, 13(1), 86-95

The brazilian sugarcane innovation system

Furtado AT, Scandiffio MIG, Cortez LAB
Energy Policy. 2011, 39(1), 156-166

The Human Nucleolar Protein FTSJ3 Associates with NIP7 and Functions in Pre-rRNA Processing

Morello LG, Coltri PP, Quaresma AJC, Simabuco FM, Silva TCL, Singh G, Nickerson JA, Oliveira CC, Moore MJ, Zanchin NIT
PloS One. 2011, 6(12), e29174

Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse

Oliveira JVC, Gouvea PF, Bernardes LAS, Souza WR, Vries RP, Goldman GH
Biotechnology for Biofuels. 2011, 4, 40

Using neural networks to solve nonlinear differential equations in atomic and molecular physics

Caetano C, Reis Jr. JL, Amorim J, Lemes MR, Dal Pino Jr. A
International Journal of Quantum Chemistry. 2011, 111(12), 2732-2740

Electric and spectroscopic properties of argon-hydrogen RF microplasma jets at atmospheric pressure

Souza-Correa JA, Oliveira C, Gomes MP, Amorim J
Journal of Physics D-Applied Physics. 2010, 43(19), 395203

Electron collisions with alpha-D-glucose and beta-D-glucose monomers

da Costa RF, Bettega MHF, Varella MTN, Lima MAP
Journal of Chemical Physics. 2010, 132(12), 124309

High-cell-density poly (3-hydroxybutyrate) production from sucrose using Burkholderia sacchari culture in airlift bioreactor

Pradella JGC, Taciro MK, Mateus AYP
Bioresource Technology. 2010, 101, 8355-8360

Identification of possible targets of the Aspergillus fumigatus CRZ1 homologue, CrzA

Soriani FM, Malavazi I, Savoldi M, Espeso E, Dinamarco TM, Bernardes LAS, Ferreira MES, Goldman MHS, Goldman GH
BMC Microbiology. 2010, 10, 12

Involvement of the Aspergillus nidulans protein kinase C with farnesol tolerance is related to the unfolded protein response

Colabardini AC, de Castro PA, de Gouvêa PF, Savoldi M, Malavazi I, Goldman MHS, Goldman GH
Molecular Microbiology. 2010, 78, 1259-1279

Low-energy elastic electron scattering from furan

Khakoo MA, Muse J, Ralphs K, da Costa RF, Bettega MHF, Lima MAP
Physical Review A. 2010, 81, 062716

Low-energy electron collisions with pyrrole

Oliveira EM, Lima MAP, Bettega MHF, Sanchez SD, Costa RF, Varella MTN
Journal of Chemical Physics. 2010, 132, 204301

Possibility of nonexistence of hot and superhot hydrogen atoms in electrical discharges

Loureiro J, Amorim J
Physical Review E. 2010, 82(3), 035401

Seed Cell Wall Storage Polysaccharides: Models to Understand Cell Wall Biosynthesis and Degradation

Buckeridge MS
Plant Physiology. 2010, 154(3), 1017-1023

Study of Mechanical and Thermal Properties of the Polymer Poly-3-Hydroxybutyrate (PHB) and PHB/Wood Flour Composites

Machado MLC, Pereira NC, de Miranda LF, Terence MC, Pradella JGC
Polimeros-Ciencia e Tecnologia. 2010, 20(1), 65-71

Substrate cleavage pattern, biophysical characterization and low-resolution structure of a novel hyperthermostable arabinanase from Thermotoga petrophila

Squina FM, dos Santos CR, Ribeiro DA, Cota J, Oliveira RR, Ruller R, Mort AJ, Murakami MT, Prade RA
Biochemical and Biophysical Research Communications. 2010, 399, 505-511

The conserved and divergent roles of carbonic anhydrases in the filamentous fungi Aspergillus fumigatus and Aspergillus nidulans

Han K-H, Chun Y-H, Figueiredo BCP, Soriani FM, Savoldi M, Almeida A, Rodrigues Fe, Cairns CT, Bignell E, Tobal JM, Kim J-H, Bahn Y-S, Goldman MHS, Goldman GH, Ferreira MES
Molecular Microbiology. 2010, 75, 1372-1388

The roles played by Aspergillus nidulans apoptosis-inducing factor (AIF)-like mitochondrial oxidoreductase (AifA) and NADH-ubiquinone oxidoreductases (NdeA-B and NdiA) in farnesol resistance

Dinamarco TM, Pimentel BCF, Savoldi M, Malavazi I, Soriani FM, Uyemura SA, Ludovico P, Goldman MHS, Goldman GH
Fungal Genetics and Biology. 2010, 47(12), 1055-1069

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